PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB10G13790.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family FAR1
Protein Properties Length: 338aa    MW: 40438.2 Da    PI: 9.2853
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB10G13790.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR137.11e-113181151
          FAR1  1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkkteke 51
                  +fYn+YAk+ GFsvrk+  +++kr g++  r+ vCskeg re++k +te++
  OB10G13790.1 31 NFYNTYAKKKGFSVRKDIVRREKRVGNVHYRRHVCSKEGIRETSKINTEDR 81
                  6*****************************************999884443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.2E-93181IPR004330FAR1 DNA binding domain
PfamPF105512.6E-30222315IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MFHNIEEENV ALDEYWNIIQ MNFQFEDDGY NFYNTYAKKK GFSVRKDIVR REKRVGNVHY  60
RRHVCSKEGI RETSKINTED RQRGVWFVDN FVDEHNHSLT SHDKTPFLRS HRKIKEFQKS  120
EIQTIESISI RKNVIMKVMK SKYGGYDKVG FVKKDLYNYS SRYKRDRILE GDANAALDIM  180
KKRHHMDPYF FYEYQVDKEG CLKNLFWCDA QSRMDYQSFG DVVVFDSTQR MNKYNMPFIP  240
FVGLNHHRQT TVFACGIVSD KCVQSYNWML HVFLRAMCEQ KPKSIITDSD NVMMKAIRQM  300
LPETNHRVCS WHIEKGIIKH LHFSYINIFK FSIYDACS
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB10G13790.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015696943.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLJ3N1I10.0J3N1I1_ORYBR; Uncharacterized protein
STRINGOB10G13790.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-67FAR1-related sequence 5