PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB10G13680.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 429aa    MW: 45324.3 Da    PI: 6.2946
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB10G13680.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.78.8e-05117139123
                   EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                   ++C+ Cg+ F ++   + H+r+H
  OB10G13680.1 117 FPCHFCGREFGSRNAVHGHMRVH 139
                   89*******************99 PP
2zf-C2H2110.0013304326123
                   EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                   ++C+ C+  F++   L  H+r+H
  OB10G13680.1 304 HQCKQCPAAFPTGVALGGHMRKH 326
                   79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.19E-6115143No hitNo description
SMARTSM003550.0033117139IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.2E-4117142IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.861117144IPR007087Zinc finger, C2H2
PROSITE patternPS000280119139IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.5E-4250275IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003551.4251275IPR015880Zinc finger, C2H2-like
PfamPF139120.044251271IPR007087Zinc finger, C2H2
PROSITE patternPS000280253275IPR007087Zinc finger, C2H2
SMARTSM003550.026304326IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.349304331IPR007087Zinc finger, C2H2
PfamPF139126.7E-8304326IPR007087Zinc finger, C2H2
PROSITE patternPS000280306326IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MEGGKSSGNG ESARRRPEEE EESRHGGGGY YDSGSESEDD DGRYVFRARL GEEEEELEER  60
EHAACKRRRV EDVVADRREA LVAALPSPTP SSGSERTVSD DGAGAAGAPV AAAREAFPCH  120
FCGREFGSRN AVHGHMRVHQ GEDKEKASTG KCRRGGHCRA VAVAFPVSNE ELEGGERALR  180
PELAQVAAAV ATAYPVPVRD EPSLNQVFDD HHVRAAAPNL AAGAHHDAPA PPQLARPWAQ  240
LLPEAPHGGP YRCKYEGCYK EFETHQGLGG HVAGHIIREK LVATAAAAQG GNGDDAGAKP  300
VVMHQCKQCP AAFPTGVALG GHMRKHFDRK LIVNRKKQKP PPPLPGQVAA PAPDPAVPAI  360
VAAASPPAQS EQPKVEVAEH GAEPASEPTP TPAAAPAPVP VPAPTNRPRR VRIFGVEVET  420
SADAEEPDV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16569KRRRV
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB10G13680.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015696942.11e-167PREDICTED: zinc finger protein 219-like
TrEMBLJ3N1H00.0J3N1H0_ORYBR; Uncharacterized protein
STRINGOB10G13680.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139281224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46080.16e-11C2H2 family protein