PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB10G13660.1

Common Name

LOC102709111

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NF-YC

Protein Properties

Length: 308aa MW: 34173.6 Da PI: 4.5069

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB10G13660.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	71.4	1.4e-22	31	128	2	96
NF-YC 2 lksfwe...kqiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdi 95 +++fw+ +qie+++ ++ lP+ar+k+++ a+e m+sa++P++++k ce+f+ el lr+wl a++ +r+ + +di +a+t t+ + fl ++ OB10G13660.1 31 MEKFWSwthEQIEESSGGQELILPIARVKNVIHAEEGGMMLSADTPAFVTKLCEIFVQELILRAWLCADSHNREIILGTDIVEAITTTESYHFLGNV 127 5678862225688888888999************************************************************************887 PP NF-YC 96 v 96 OB10G13660.1 128 L 128 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00125	3.1E-9	26	115	IPR007125	Histone H2A/H2B/H3
SuperFamily	SSF47113	2.35E-15	31	124	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	1.2E-17	53	128	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence Send to blast
MSIPPKEGVD PSQEDDTLSR LQLLAQQRRT MEKFWSWTHE QIEESSGGQE LILPIARVKN 60 VIHAEEGGMM LSADTPAFVT KLCEIFVQEL ILRAWLCADS HNREIILGTD IVEAITTTES 120 YHFLGNVLRS HQALVSIIPD TDVSDRKRHK LNEMSSICPS PQEVQVPYLA MYLPQVLGCP 180 IGQMGTHHTP PPSEFMMQRE YLLKANNEKS PLVVTMNGSD VLASGGGASS DVSIDTKQGE 240 TAQPFSIQYT GHGHSSSVPC DENIKQLRQE EQNVDQDAVV GEDILPNKSL EGSHMDVDMV 300 FPDKDIPQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB10G13660.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006661675.1	0.0	PREDICTED: nuclear transcription factor Y subunit C-1-like
TrEMBL	J3N1G8	0.0	J3N1G8_ORYBR; Uncharacterized protein
STRING	OB10G13660.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13968	15	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48590.1	2e-19	nuclear factor Y, subunit C1

Link Out ? help Back to Top
Entrez Gene	102709111