PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB10G11890.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ZF-HD
Protein Properties Length: 427aa    MW: 46236.1 Da    PI: 8.2106
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB10G11890.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer26.71.3e-08791053258
   ZF-HD_dimer  32 egeegtaaalkCaACgCHRnFHRreve 58 
                    +eeg+ +alkC+ACgC  nFH ++v+
  OB10G11890.1  79 ADEEGSLEALKCSACGCRNNFHHKDVD 105
                   46779******************9976 PP
2ZF-HD_dimer26.21.9e-081581843258
   ZF-HD_dimer  32 egeegtaaalkCaACgCHRnFHRreve 58 
                    +eeg+ +alkC+ACgC  nFH ++v+
  OB10G11890.1 158 ADEEGSLEALKCSACGCRNNFHHKDVD 184
                   46779******************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047708.0E-679103IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257747.0E-481105IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047708.0E-6158182IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257747.0E-4160184IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:3.30.200.202.0E-20239351No hitNo description
PROSITE profilePS5001125.573248427IPR000719Protein kinase domain
SMARTSM002208.3E-10248427IPR000719Protein kinase domain
SuperFamilySSF561121.91E-42249427IPR011009Protein kinase-like domain
PfamPF000693.8E-28251424IPR000719Protein kinase domain
Gene3DG3DSA:1.10.510.102.7E-18352427No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006468Biological Processprotein phosphorylation
GO:0004672Molecular Functionprotein kinase activity
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MGRRLPATAA HLRRGLSSKL HVSTDHDQQQ QAIRLTVGLL PGAVATHGPD IARVSEEPRW  60
VHWRQSHRRV RQVHAQQRAD EEGSLEALKC SACGCRNNFH HKDVDDFDGD SCAAHAHGHS  120
HGYGDALRGS VPAAAAIPGV LWRQGPRRVR QVHAQQRADE EGSLEALKCS ACGCRNNFHH  180
KDVDDFDGDS CAAHAHGHSH GYGDALRGSV PAAAGISPGP PCRCTTTRMT AAKLPSSLPP  240
TRRPHENSSR LGALGRGACA VVYEARDRCT GETVAVKCFC TPGGGGGPQE DALAFARERH  300
CLEVCRGHPS VVQLRDVAVD PTCSWDRYLV MEFVGRCTLR DLIFCGRPFS NAETRALMRQ  360
LLAGARAIHG AGLIHRHIKP ANVLVGPGCT LKFCDFGDAT PAIPPHEEFL VGTLRYTSPE  420
QLVGDRY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4aaa_A4e-1724642525199CYCLIN-DEPENDENT KINASE-LIKE 2
4bbm_A4e-1724642525199CYCLIN-DEPENDENT KINASE-LIKE 2
4bbm_B4e-1724642525199CYCLIN-DEPENDENT KINASE-LIKE 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB10G11890.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLJ3N0Z10.0J3N0Z1_ORYBR; Uncharacterized protein
STRINGOB10G11890.10.0(Oryza brachyantha)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12020.31e-08WRKY family protein