PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB09G26820.1 | ||||||||
Common Name | LOC102717740 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NF-YB | ||||||||
Protein Properties | Length: 159aa MW: 17492.5 Da PI: 4.5643 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 52.3 | 1.4e-16 | 26 | 121 | 6 | 95 |
NF-YB 6 rflPianvsrimkkvlPanak......iskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 ++lP a v r++k l + a + +da e + fi ++++ a+d c++ kr+tin+dd+l al ++ f ++vepl++ l+++r+ ++ OB09G26820.1 26 EELPKAIVRRLVKDKLTQVAAggaeviVNRDAMAAFAESARIFIHYLSATANDMCKESKRQTINADDVLKALDEMEFPEFVEPLNTSLQEFRNKNA 121 67999*******9988764432222337899*************************************************************9776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 9.6E-32 | 23 | 155 | IPR009072 | Histone-fold |
Pfam | PF00808 | 7.6E-11 | 27 | 97 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
SuperFamily | SSF47113 | 8.93E-26 | 28 | 154 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 159 aa Download sequence Send to blast |
MAGETGSQPP EGAKPVLASM AEAEVEELPK AIVRRLVKDK LTQVAAGGAE VIVNRDAMAA 60 FAESARIFIH YLSATANDMC KESKRQTINA DDVLKALDEM EFPEFVEPLN TSLQEFRNKN 120 AARRSETTQK KAEKRRKIDK DSVPQEQNDA ADDGNADED |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB09G26820.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK242634 | 1e-173 | AK242634.1 Oryza sativa Japonica Group cDNA, clone: J090023D18, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006661566.1 | 1e-112 | PREDICTED: DNA polymerase epsilon subunit 3-like | ||||
TrEMBL | J3N0A3 | 1e-111 | J3N0A3_ORYBR; Uncharacterized protein | ||||
STRING | OB09G26820.1 | 1e-112 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10414 | 37 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27470.1 | 3e-36 | nuclear factor Y, subunit B11 |
Link Out ? help Back to Top | |
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Entrez Gene | 102717740 |