PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB09G25570.1
Common NameLOC102702132
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 349aa    MW: 38475.6 Da    PI: 7.0153
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB09G25570.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM175.21.9e-541072361128
           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                   lppGfrFhPtdeelv++yLk+k++g k+el ++i+evd+yk+ePw+L  k  + +++ ewyfF +rd+ky++g r+nrat++gyWk+tgkd++v+++
  OB09G25570.1 107 LPPGFRFHPTDEELVNYYLKRKIHGLKIEL-DIIPEVDLYKCEPWELAeKsFLPSRDPEWYFFGPRDRKYPNGFRTNRATRAGYWKSTGKDRRVVHQ 202
                   79****************************.99**************84335556888************************************999 PP

           NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                    +g+ +g+kktLv+y+grap+g++tdWvmheyrl
  OB09G25570.1 203 hGGRSIGMKKTLVYYRGRAPQGVRTDWVMHEYRL 236
                   78899***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.27E-6499259IPR003441NAC domain
PROSITE profilePS5100560.773107259IPR003441NAC domain
PfamPF023651.6E-29108236IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MVKVQASCEG EGICKRGAKV GHPIDRNLVG GMTMSTVPTT VPSTPAAAMK NLLIRGLAAA  60
AAGKGRSSSA EEARCLCAKP PAPEKTRKLQ RPCRQSPTSS LMAPVGLPPG FRFHPTDEEL  120
VNYYLKRKIH GLKIELDIIP EVDLYKCEPW ELAEKSFLPS RDPEWYFFGP RDRKYPNGFR  180
TNRATRAGYW KSTGKDRRVV HQHGGRSIGM KKTLVYYRGR APQGVRTDWV MHEYRLDDKD  240
CEDTMPIQDT YALCRVFKKN AICSEVEELQ GQCSMALLEG ACQQLLASGG QEQYETPSPD  300
VPVGSTSGAD AEDDPDKDDS WMQFISDDAW CSSTADGAEE STSCVALAG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-5210325911168Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC086, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269|PubMed:25081480}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00363DAPTransfer from AT3G17730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB09G25570.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Regulated by the transcription factor APL (AC Q9SAK5). {ECO:0000269|PubMed:25081480}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006661516.20.0PREDICTED: NAC domain-containing protein 92-like
SwissprotA4VCM02e-82NAC45_ARATH; NAC domain-containing protein 45
TrEMBLJ3MZX80.0J3MZX8_ORYBR; Uncharacterized protein
STRINGOB09G25570.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37133879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17730.11e-119NAC domain containing protein 57
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]