PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB09G23080.1

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 366aa MW: 38856.3 Da PI: 6.4309

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB09G23080.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33	1.3e-10	187	245	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r NR +A rs +RK +i+eLe+kv++L++e ++L +l l+ + l++e+ OB09G23080.1 187 KRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATTLSAQLALLQRDTSGLTTEN 245 9*********************************************9999888888776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.1E-16	183	247	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.898	185	248	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.5E-10	187	242	No hit	No description
SuperFamily	SSF57959	1.13E-10	187	238	No hit	No description
Pfam	PF00170	2.7E-9	187	245	IPR004827	Basic-leucine zipper domain
CDD	cd14703	1.18E-22	188	237	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence Send to blast
MNRAQSPIPG DGGAGAGDGL PPQSSRRAGA PPSSSTPPPP EFDISRMPDF PTRNPGHRRA 60 HSEILSLPED LDLCAPGGGD GPSLSDENDE ELFSMFLDVE KLNNSCGASS EAEAESSSAG 120 AAAAAGRGEG AHVPRPKHQH SQSMDESMSI KAEELVGAPG TEGMSSAEAK KAVSAAKLAE 180 LALVDPKRAK RIWANRQSAA RSKERKMRYI AELERKVQTL QTEATTLSAQ LALLQRDTSG 240 LTTENSELKL RLQTMEQQVH LQDALNDTLK AEVQRLKVAT GQMANGGGGM MMNFGAMSHQ 300 FGGGNQQMFQ NSQAMQSMLA AHQLQQLQIH PQAQQQLQQA ARDLKMKGPM GGQSQWGDGK 360 SGSAGN

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence Send to blast

MNRAQSPIPG DGGAGAGDGL PPQSSRRAGA PPSSSTPPPP EFDISRMPDF PTRNPGHRRA  60
HSEILSLPED LDLCAPGGGD GPSLSDENDE ELFSMFLDVE KLNNSCGASS EAEAESSSAG  120
AAAAAGRGEG AHVPRPKHQH SQSMDESMSI KAEELVGAPG TEGMSSAEAK KAVSAAKLAE  180
LALVDPKRAK RIWANRQSAA RSKERKMRYI AELERKVQTL QTEATTLSAQ LALLQRDTSG  240
LTTENSELKL RLQTMEQQVH LQDALNDTLK AEVQRLKVAT GQMANGGGGM MMNFGAMSHQ  300
FGGGNQQMFQ NSQAMQSMLA AHQLQQLQIH PQAQQQLQQA ARDLKMKGPM GGQSQWGDGK  360
SGSAGN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269\|PubMed:11390974, ECO:0000269\|PubMed:12855676, ECO:0000269\|PubMed:14704272, ECO:0000269\|PubMed:9311985}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00126	DAP	Transfer from AT1G06070	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB09G23080.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK102795	0.0	AK102795.1 Oryza sativa Japonica Group cDNA clone:J033108B13, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015696550.1	0.0	PREDICTED: transcription factor RF2a
Swissprot	Q69IL4	1e-174	RF2A_ORYSJ; Transcription factor RF2a
TrEMBL	J3MZ79	0.0	J3MZ79_ORYBR; Uncharacterized protein
STRING	OB09G23080.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4269	38	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06070.1	2e-72	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Dai S,Zhang Z,Bick J,Beachy RN Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus. J. Gen. Virol., 2006. 87(Pt 3): p. 715-22 [PMID:16476995] Liu Y,Dai S,Beachy RN Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription. Biochem. J., 2007. 405(2): p. 243-9 [PMID:17371296] Dai S, et al. Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease. Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6 [PMID:19104064] Ordiz MI,Yang J,Barbazuk WB,Beachy RN Functional analysis of the activation domain of RF2a, a rice transcription factor. Plant Biotechnol. J., 2010. 8(7): p. 835-44 [PMID:20408988]