PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB09G21390.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 270aa    MW: 30284.9 Da    PI: 10.1723
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB09G21390.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.51.1e-112879447
                     S-HHHHHHHHHHHHHTTTT-HHHHHHHHT........TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmg........kgRtlkqcksrwqky 47
                     W t E++ll++av ++G+g+W+++a +++         g+t+ +c++r++++
     OB09G21390.1 28 WGTLEELLLACAVSRHGTGSWDSVAMEVQtrsplaarPGLTPTSCRLRFRQL 79
                     9999*********************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007179.1E-72482IPR001005SANT/Myb domain
SuperFamilySSF466893.26E-62682IPR009057Homeodomain-like
PfamPF002495.4E-112879IPR001005SANT/Myb domain
CDDcd001673.01E-72879No hitNo description
Gene3DG3DSA:1.10.10.607.0E-62882IPR009057Homeodomain-like
PROSITE profilePS500906.5392880IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MADGSDGTDV SPSPAAAEAA ALGGGEIWGT LEELLLACAV SRHGTGSWDS VAMEVQTRSP  60
LAARPGLTPT SCRLRFRQLH RRASLARRXX XXXXXREEEE EDEEADGPDA SAADGWMDEL  120
RRLRVAELRR EVERCDLSIG TLQTKVKRLR EDRERRIHGG GXXXXXXXXX XXXXXXXXXX  180
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXLVVA  240
AARRAARHVR VQVRVAARAA ARMPGKKKAI
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB09G21390.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1087622e-87AC108762.2 Oryza sativa Japonica Group chromosome 9 clone OSJNBb0052C07, complete sequence.
GenBankAK1083352e-87AK108335.1 Oryza sativa Japonica Group cDNA clone:002-142-A05, full insert sequence.
GenBankAP0149652e-87AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015696396.11e-102PREDICTED: uncharacterized protein LOC102706783
TrEMBLJ3MYR01e-100J3MYR0_ORYBR; Uncharacterized protein
STRINGOB09G21390.11e-101(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31812648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42150.11e-12DNA-binding bromodomain-containing protein