PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB09G19180.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HSF
Protein Properties Length: 360aa    MW: 40488.4 Da    PI: 11.9202
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB09G19180.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind80.13.4e-251879103
                   HHCTGGGTTTSEESSSSSEEEES-HHHHH.HHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXXXX CS
  HSF_DNA-bind   9 iledeelkeliswsengnsfvvldeeefa.kkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkkse 103
                   ++e+++++e+isw ++g+sfvv+++   a +++Lp +Fkh nf+SFvRQLn+YgF+kv  ++         weF++ +F++g++ ll+ i+r+k +
  OB09G19180.1   1 MVEEHATDEVISWGKEGRSFVVWKPGGVApDHLLPLHFKHCNFSSFVRQLNTYGFRKVVPDR---------WEFANGNFRRGEQGLLSGIRRRKAT 87 
                   899*********************9988735788**************************99.........**********************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.1E-35184IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.7E-26184IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467854.49E-24184IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.6E-22184IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.1E-83345IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043403458IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.1E-84658IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MVEEHATDEV ISWGKEGRSF VVWKPGGVAP DHLLPLHFKH CNFSSFVRQL NTYGFRKVVP  60
DRWEFANGNF RRGEQGLLSG IRRRKATTPQ SSKSCGSGVN VAFPPPLPPL PPAPSGTTSS  120
GNDRSSSSAS SPPRADITSE NEQLRKDNRT LTTELARARR QCEELLGFLS RFLDVRQLDL  180
RLLMQEDMRA XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  240
XXXXHASGGG RRRRRAARAR ALPRRRQVRE AVRRAPRRHP WRRHEEEGAG AVRGGSGQRA  300
ADQDDQDRRT LGQRAVLGAG AVWRRQLKSK LMRAGAACCV RACTGKLAAK NGSISQEVIR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d8k_B5e-1518812109Heat shock factor protein 2
5d8l_B5e-1518812109Heat shock factor protein 2
5d8l_D5e-1518812109Heat shock factor protein 2
5d8l_F5e-1518812109Heat shock factor protein 2
5d8l_H5e-1518812109Heat shock factor protein 2
5hdk_A6e-1518417110Heat shock factor protein 2
5hdk_B6e-1518417110Heat shock factor protein 2
5hdk_C6e-1518417110Heat shock factor protein 2
5hdk_D6e-1518417110Heat shock factor protein 2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB09G19180.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0614330.0AK061433.1 Oryza sativa Japonica Group cDNA clone:006-307-A01, full insert sequence.
GenBankHQ8588290.0HQ858829.1 Oryza sativa Japonica Group isolate UT1328 HSF-BDB transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015696881.11e-136PREDICTED: heat stress transcription factor B-1
SwissprotQ67TP92e-99HSFB1_ORYSJ; Heat stress transcription factor B-1
TrEMBLJ3MY391e-175J3MY39_ORYBR; Uncharacterized protein
STRINGOB09G19180.11e-176(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.12e-37heat shock factor 4
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Grand X, et al.
    Identification of positive and negative regulators of disease resistance to rice blast fungus using constitutive gene expression patterns.
    Plant Biotechnol. J., 2012. 10(7): p. 840-50
    [PMID:22607456]