PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB09G19140.1

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 370aa MW: 39600.9 Da PI: 9.7288

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB09G19140.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	42.7	1.2e-13	291	337	5	51
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 +r+rr++kNRe+A rsR+RK+a++ eLe +v++L++ Nk+L + e OB09G19140.1 291 RRQRRMIKNRESAARSRARKQAYTMELEAEVQKLKELNKELERKQAE 337 79************************************988765444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.5E-11	287	352	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.76	289	340	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.1E-13	291	339	No hit	No description
SuperFamily	SSF57959	7.5E-10	291	339	No hit	No description
Pfam	PF00170	1.0E-11	291	339	IPR004827	Basic-leucine zipper domain
CDD	cd14707	2.24E-24	291	343	No hit	No description
PROSITE pattern	PS00036	0	294	309	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence Send to blast
MLTDRWGGRR EAMEFKNGGS SSERRAPAAE GTTLARQGSV YSLTFDEFQS ALGGGGGGGS 60 GFGKDFGSMN MDELLRSIWT AEESQAMASA SGSAAGVGMG VGAPPTSLQR QGSLTLPRTL 120 SAKTVDEVWR NLVRDEPPPV GADGGEMPPP RQATLGEMTL EEFLVRAGVV RENPPATPTV 180 PPPPMPPRPV PVVPKTTAFL GNFPGANDVG AAALGFAPLG LGDPTLGNGL MPRAVGLPGG 240 AIAMQAAVNQ FDSGDKGNSD LSSPTEPMPY SFEGLVRGRR NGAGVEKVVE RRQRRMIKNR 300 ESAARSRARK QAYTMELEAE VQKLKELNKE LERKQAEIME VQKNEVEEMI KDPFGRRKRL 360 CLRRTLTGPW

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence Send to blast

MLTDRWGGRR EAMEFKNGGS SSERRAPAAE GTTLARQGSV YSLTFDEFQS ALGGGGGGGS  60
GFGKDFGSMN MDELLRSIWT AEESQAMASA SGSAAGVGMG VGAPPTSLQR QGSLTLPRTL  120
SAKTVDEVWR NLVRDEPPPV GADGGEMPPP RQATLGEMTL EEFLVRAGVV RENPPATPTV  180
PPPPMPPRPV PVVPKTTAFL GNFPGANDVG AAALGFAPLG LGDPTLGNGL MPRAVGLPGG  240
AIAMQAAVNQ FDSGDKGNSD LSSPTEPMPY SFEGLVRGRR NGAGVEKVVE RRQRRMIKNR  300
ESAARSRARK QAYTMELEAE VQKLKELNKE LERKQAEIME VQKNEVEEMI KDPFGRRKRL  360
CLRRTLTGPW

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that mediates abscisic acid (ABA) signaling. Binds specifically to the ABA-responsive element (ABRE) of the EMP1 and RAB16A gene promoters. {ECO:0000269\|PubMed:10611387}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB09G19140.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA). {ECO:0000269\|PubMed:10611387}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK065873	0.0	AK065873.1 Oryza sativa Japonica Group cDNA clone:J013049N23, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015696857.1	0.0	PREDICTED: bZIP transcription factor TRAB1-like
Swissprot	Q6ZDF3	1e-118	TRAB1_ORYSJ; bZIP transcription factor TRAB1
TrEMBL	J3MY35	0.0	J3MY35_ORYBR; Uncharacterized protein
STRING	OB09G19140.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP706	38	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56850.1	5e-35	ABA-responsive element binding protein 3

Publications ? help Back to Top
Kagaya Y,Hobo T,Murata M,Ban A,Hattori T Abscisic acid-induced transcription is mediated by phosphorylation of an abscisic acid response element binding factor, TRAB1. Plant Cell, 2002. 14(12): p. 3177-89 [PMID:12468735] Kobayashi Y, et al. Abscisic acid-activated SNRK2 protein kinases function in the gene-regulation pathway of ABA signal transduction by phosphorylating ABA response element-binding factors. Plant J., 2005. 44(6): p. 939-49 [PMID:16359387] Kobayashi F,Maeta E,Terashima A,Takumi S Positive role of a wheat HvABI5 ortholog in abiotic stress response of seedlings. Physiol Plant, 2008. 134(1): p. 74-86 [PMID:18433415]