PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB09G19080.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HSF
Protein Properties Length: 420aa    MW: 45276.5 Da    PI: 8.9811
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB09G19080.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.81e-34251172102
                   HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 
                   Fl+k+y++++d+++++++sw  ++ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+kv  e+         weF+++ F+kg+k+ll++i
  OB09G19080.1  25 FLTKTYQLVDDPATDHIVSWGdDRVSTFVVWRPPEFARDILPNYFKHNNFSSFVRQLNTYGFRKVVPER---------WEFANEFFRKGEKQLLCEI 112
                   9********************6667*****************************************999.........******************* PP

                   XXXXX CS
  HSF_DNA-bind  98 krkks 102
                   +r+k 
  OB09G19080.1 113 HRRKA 117
                   **985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.4E-3614110IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.9E-5821115IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.81E-3122115IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.2E-192548IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.1E-3025115IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-196476IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406589IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-197789IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MERCGSWSDC EVAAAAAQKA VPAPFLTKTY QLVDDPATDH IVSWGDDRVS TFVVWRPPEF  60
ARDILPNYFK HNNFSSFVRQ LNTYGFRKVV PERWEFANEF FRKGEKQLLC EIHRRKAPPA  120
SRAPPSPPPF FAPPHFPLFH HPGVAAAQHH HPFVGDDGVV AAHAMGVPFP QPHWREPNMP  180
VATRLLALGG PAPSSASAAE SGGAGRAATA AVLMEENERL RRSNTALLQE LAHMRKLYND  240
IIYFVQNHVR PVAPSPAAAS FLQGLGMQAR KKPAAANVLN NSGGSTTSSS SLTIAEEPSP  300
PPQQQQLXXX XXXXXXXXXX XXXXXPPQKQ QLAAEKSGGE AGSSSAPRST APTKLFGVHL  360
STAPCGAGSK RPSSPEEHPP TSPATKPRLV LECDDLSLTV APSSSSQQQP SGTSSPTSTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-211411519129Heat shock factor protein 1
5d5v_B2e-211411519129Heat shock factor protein 1
5d5v_D2e-211411519129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00187DAPTransfer from AT1G46264Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB09G19080.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2411900.0AK241190.1 Oryza sativa Japonica Group cDNA, clone: J065120N14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006660690.10.0PREDICTED: heat stress transcription factor B-4c
SwissprotQ67U940.0HFB4C_ORYSJ; Heat stress transcription factor B-4c
TrEMBLJ3MY290.0J3MY29_ORYBR; Uncharacterized protein
STRINGOB09G19080.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.15e-53heat shock transcription factor B4