PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB09G17960.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 398aa    MW: 42668.4 Da    PI: 4.6163
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB09G17960.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.61.8e-19137186255
           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                   +y+G+r+++ +g+W+AeIrdps+     r++lg++ taeeAa+a++a ++k++g
  OB09G17960.1 137 QYRGIRQRP-WGKWAAEIRDPSK---GVRVWLGTYNTAEEAARAYDAEARKIRG 186
                   69*******.**********965...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.71E-32137195No hitNo description
Gene3DG3DSA:3.30.730.101.8E-32137195IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-22137196IPR016177DNA-binding domain
SMARTSM003805.4E-37137200IPR001471AP2/ERF domain
PROSITE profilePS5103223.933137194IPR001471AP2/ERF domain
PfamPF008476.7E-12138186IPR001471AP2/ERF domain
PRINTSPR003672.7E-11138149IPR001471AP2/ERF domain
PRINTSPR003672.7E-11160176IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001666Biological Processresponse to hypoxia
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MCGGAIISGF IPPSAGAAXA AAKKQGRRVT ADVLWPGMRG KAKAGRGFGV EDDFEADFRE  60
FEQGLSDDEA DGGGGEVDDD DDDVVVEVPP PARSVFGGAA KAAAGIAPPT ADGVLTPKLV  120
QHDGPTARSA KRKRKNQYRG IRQRPWGKWA AEIRDPSKGV RVWLGTYNTA EEAARAYDAE  180
ARKIRGKKAK VNFPDELSVA QKPSLKQNAA KQEKLTPPLK TCVDDAFIHP NNADNDLFAM  240
FSFSDKKVPA KPEEPVGILP PVKPLVSTET FEINMLSDES SNSFGSSDFG WDDDILTPDY  300
TSVFVPNAYG EPAYLTGGAP KKMRNNYGVA VPQGNGMPDL TQNMPTFDPG MKYTPLPYVE  360
SSSDESMDSL LQNDATQDGA SNVGIWSLDE LLLAAGAY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-19137194563ATERF1
3gcc_A1e-19137194563ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB09G17960.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006660653.10.0PREDICTED: ethylene-responsive transcription factor 1-like
TrEMBLJ3MXR70.0J3MXR7_ORYBR; Uncharacterized protein
STRINGOB09G17960.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112003142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.31e-30related to AP2 12