PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB09G17420.1 | ||||||||
Common Name | LOC102717923 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | AP2 | ||||||||
Protein Properties | Length: 381aa MW: 41372 Da PI: 9.0524 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 49 | 1.5e-15 | 46 | 105 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d s+n k+ k+++lg ++ +e A +a++ a++k++g OB09G17420.1 46 SVYRGVTRHRWTGRFEAHLWDkNSWNEsqnKKgKQVYLGAYDDEEAAGRAYDLAALKYWG 105 78*******************888866656446**********99*************98 PP | |||||||
2 | AP2 | 52.1 | 1.6e-16 | 148 | 199 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa a++ a+ +++g OB09G17420.1 148 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAMAYDMAAIEYRG 199 89****99**********99966...3.6*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 9.0E-12 | 46 | 105 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.14E-17 | 46 | 115 | No hit | No description |
SuperFamily | SSF54171 | 7.85E-17 | 46 | 115 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.0E-15 | 47 | 115 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.086 | 47 | 113 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.2E-24 | 47 | 119 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.5E-6 | 48 | 59 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.88E-22 | 148 | 209 | No hit | No description |
SuperFamily | SSF54171 | 6.54E-18 | 148 | 209 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.5E-12 | 148 | 199 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.3E-18 | 149 | 208 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.7E-25 | 149 | 213 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.36 | 149 | 207 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.5E-6 | 189 | 209 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0010187 | Biological Process | negative regulation of seed germination | ||||
GO:0040008 | Biological Process | regulation of growth | ||||
GO:0045723 | Biological Process | positive regulation of fatty acid biosynthetic process | ||||
GO:1901959 | Biological Process | positive regulation of cutin biosynthetic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000981 | Molecular Function | RNA polymerase II transcription factor activity, sequence-specific DNA binding | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 381 aa Download sequence Send to blast |
MAKPRKNTAA TTNTGSRGRG AVAAAAVKPK RTRKSVPRES PSQRSSVYRG VTRHRWTGRF 60 EAHLWDKNSW NESQNKKGKQ VYLGAYDDEE AAGRAYDLAA LKYWGPDTIL NFPLSAYDDE 120 LKEMEGQSRE EYIGSLRRKS SGFSRGVSKY RGVARHHHNG RWEARIGRVF GNKYLYLGTY 180 ATQEEAAMAY DMAAIEYRGL NAVTNFDLSR YIKWLRPGAD GGVGAAQNPH PMLGGLSAVD 240 LDAMASSFQH DGHGAAAAAA AQLIPLPSRT SLGPTTTTSA LSLLLQSPKF KEMIEQTSAA 300 ETTTSSTTTS SSSPSPPRPS LRQATKDDAS PQCSFPEDIQ TYFGCAAEDG AAVAGYTDVD 360 GLFFGDLAAY ASPAFHFELD L |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB09G17420.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK111617 | 0.0 | AK111617.1 Oryza sativa Japonica Group cDNA clone:J013102L16, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015696557.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 | ||||
Swissprot | Q94AN4 | 1e-110 | AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060 | ||||
TrEMBL | J3MXL3 | 0.0 | J3MXL3_ORYBR; Uncharacterized protein | ||||
STRING | OB09G17420.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3319 | 36 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79700.2 | 1e-102 | AP2 family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 102717923 |
Publications ? help Back to Top | |||
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