PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OB09G16970.1 | ||||||||
Common Name | LOC102706407 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 300aa MW: 31895.6 Da PI: 6.5968 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 91.7 | 5.8e-29 | 124 | 182 | 1 | 58 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 ++Dgy+WrKYGqK+ +++++pr+Y+rC++a +Cpvkkkv+r+ ed ++++ tYegeHnh OB09G16970.1 124 VKDGYQWRKYGQKVTRDNPYPRAYFRCAFApSCPVKKKVQRCVEDRSMLVATYEGEHNH 182 58***************************99**************************** PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 7.9E-29 | 116 | 183 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 25.488 | 119 | 185 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 9.94E-25 | 123 | 182 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.7E-33 | 124 | 184 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.0E-24 | 125 | 182 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009620 | Biological Process | response to fungus | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:1900425 | Biological Process | negative regulation of defense response to bacterium | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 300 aa Download sequence Send to blast |
MDDGDGGSPT NSAGLLPLFS RSPVEDLEEK LRRATEENAR LTRALDAILA GHHAHHRDPG 60 APSATTRAPN ASTSCAARDD DAPVTATAAA AVSTAPAPKA EPRPKIRTVR VRADADANSV 120 AENVKDGYQW RKYGQKVTRD NPYPRAYFRC AFAPSCPVKK KVQRCVEDRS MLVATYEGEH 180 NHVAQTTEFV GGSGCTMSQP AQHAAGSPPA LHPCSISINS SGRTITLDLT SQQLEPGGSS 240 CVVPGDGDLV AAAVSPEEFR RLLAEEVVQV LRNDAEFVET LTNAVAARVV DKIRAGHVDL |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 1e-19 | 124 | 182 | 14 | 71 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription repressor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Regulates, probably indirectly, the activation of defense-related genes during defense response (By similarity). Regulates negatively basal innate immunity and XA21-mediated defense against X.oryzae pv. oryzae (Xoo) (By similarity). {ECO:0000250|UniProtKB:Q6EPZ0, ECO:0000250|UniProtKB:Q6QHD1}. | |||||
UniProt | Transcription repressor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Regulates, probably indirectly, the activation of defense-related genes during defense response (By similarity). Regulates negatively basal innate immunity and XA21-mediated defense against X.oryzae pv. oryzae (Xoo) (PubMed:19825552, PubMed:21961049). {ECO:0000250|UniProtKB:Q6QHD1, ECO:0000269|PubMed:19825552, ECO:0000269|PubMed:21961049}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | OB09G16970.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Might be activated by XA21 in the nucleus upon pathogen infection (PubMed:19825552). Induced by biotic elicitors (e.g. fungal chitin oligosaccharide) (PubMed:23462973). Induced by pathogen infection (e.g. M.grisea and X.oryzae pv. oryzae (Xoo)) (PubMed:16528562, PubMed:24093634). Accumulates after treatment with benzothiadiazole (BTH) and salicylic acid (SA) (PubMed:17601827, PubMed:16528562, PubMed:24093634). Transactivated by WRKY45 (PubMed:24093634). {ECO:0000269|PubMed:16528562, ECO:0000269|PubMed:17601827, ECO:0000269|PubMed:23462973, ECO:0000269|PubMed:24093634, ECO:0000303|PubMed:19825552}. | |||||
UniProt | INDUCTION: Might be activated by XA21 in the nucleus upon pathogen infection (PubMed:20118235). Induced by biotic elicitors (e.g. fungal chitin oligosaccharide) (By similarity). Induced by pathogen infection (e.g. M.grisea and X.oryzae pv. oryzae (Xoo)). Accumulates after treatment with benzothiadiazole (BTH) and salicylic acid (SA) (PubMed:16528562). Transactivated by WRKY45 (By similarity). {ECO:0000250|UniProtKB:Q6EPZ0, ECO:0000269|PubMed:16528562, ECO:0000303|PubMed:20118235}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK067834 | 2e-90 | AK067834.1 Oryza sativa Japonica Group cDNA clone:J013121C08, full insert sequence. | |||
GenBank | DQ298182 | 2e-90 | DQ298182.1 Oryza sativa (japonica cultivar-group) WRKY transcription factor 62 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006661234.1 | 0.0 | PREDICTED: probable WRKY transcription factor 60 | ||||
Swissprot | B8BF91 | 1e-126 | WRK62_ORYSI; WRKY transcription factor WRKY62 | ||||
Swissprot | Q6EPZ0 | 1e-126 | WRK62_ORYSJ; WRKY transcription factor WRKY62 | ||||
TrEMBL | J3MXG8 | 0.0 | J3MXG8_ORYBR; Uncharacterized protein | ||||
STRING | OB09G16970.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12921 | 28 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G31800.2 | 6e-35 | WRKY DNA-binding protein 18 |
Link Out ? help Back to Top | |
---|---|
Entrez Gene | 102706407 |