PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB09G16650.1

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 275aa MW: 29393.8 Da PI: 8.2312

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB09G16650.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	133.7	1.2e-41	13	158	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdL.pk.............kvkaeekew.yfFskrdkkyatgkrknratksgy 82 lppGfrF Ptd +lv +yL++k+++ ++ ++++vd+y +ePw+L p +++ e+++ yfF++r+ + ++g r+nrat++gy OB09G16650.1 13 LPPGFRFCPTDGDLVAHYLARKAAEAGFTS-AAVRDVDLYGAEPWELlPPppptrdaaagpvtGAEEVEERCgYFFCTRSFRCPSGLRTNRATAAGY 108 79***********************999.78**********62246778888887642222222337******************** PP NAM 83 Wkatgkdkevlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128 Wk+tgkdk+v ++ ++ + +kktLvfy++rap+gekt+Wvmheyrl OB09G16650.1 109 WKSTGKDKAVRHHdggdGDVPMRVKKTLVFYRERAPRGEKTSWVMHEYRL 158 ********9666555569************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.75E-44	8	163	IPR003441	NAC domain
PROSITE profile	PS51005	40.518	13	180	IPR003441	NAC domain
Pfam	PF02365	5.1E-25	14	158	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MAGDGATAIS PPLPPGFRFC PTDGDLVAHY LARKAAEAGF TSAAVRDVDL YGAEPWELLP 60 PPPPTRDAAA GPVTGAEEVE ERCGYFFCTR SFRCPSGLRT NRATAAGYWK STGKDKAVRH 120 HDGGDGDVPM RVKKTLVFYR ERAPRGEKTS WVMHEYRLLH GGGGGALSSS SPATASVLAG 180 GVRNFIELEQ FYLINSNNSK SRALFVGRED TTINSSSGNT NRTQQHLLRD HRNHLLSSPA 240 PAPAVSVDGT AHAGCSFSGA NESMAPSDRF NQMAA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	1e-31	4	160	13	147	NAC domain-containing protein 19
3swm_B	1e-31	4	160	13	147	NAC domain-containing protein 19
3swm_C	1e-31	4	160	13	147	NAC domain-containing protein 19
3swm_D	1e-31	4	160	13	147	NAC domain-containing protein 19
3swp_A	1e-31	4	160	13	147	NAC domain-containing protein 19
3swp_B	1e-31	4	160	13	147	NAC domain-containing protein 19
3swp_C	1e-31	4	160	13	147	NAC domain-containing protein 19
3swp_D	1e-31	4	160	13	147	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB09G16650.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed post-transcriptionally by miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808, ECO:0000269\|PubMed:18305205, ECO:0000305\|PubMed:15723790}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012617	7e-93	CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006661224.1	1e-140	PREDICTED: NAC domain-containing protein 79-like
Swissprot	Q9FLR3	6e-43	NAC79_ARATH; NAC domain-containing protein 79
TrEMBL	J3MXD6	0.0	J3MXD6_ORYBR; Uncharacterized protein
STRING	OB09G16650.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15352	16	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18400.1	4e-40	NAC domain containing protein 58

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Vidal EA,Álvarez JM,Gutiérrez RA Nitrate regulation of AFB3 and NAC4 gene expression in Arabidopsis roots depends on NRT1.1 nitrate transport function. Plant Signal Behav, 2014. 9(3): p. e28501 [PMID:24642706] Lee MH,Jeon HS,Kim HG,Park OK An Arabidopsis NAC transcription factor NAC4 promotes pathogen-induced cell death under negative regulation by microRNA164. New Phytol., 2017. 214(1): p. 343-360 [PMID:28032643]