PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB09G16260.1
Common NameLOC102709024
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 293aa    MW: 31664.4 Da    PI: 4.7774
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB09G16260.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.71.5e-141461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++lv      G  +W+++++  g+ R++k+c++rw +yl
     OB09G16260.1 14 KGPWTAEEDQKLVSFLLGNGQCCWRAVPKLAGLLRCGKSCRLRWTNYL 61
                     79******************************99************97 PP
2Myb_DNA-binding51.62.2e-1671111547
                      -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++ E++  +d+++qlG++ W++Ia+ ++ gRt++++k++w+++
     OB09G16260.1  71 SEAEEKTVIDLHEQLGNR-WSKIASQLP-GRTDNEIKNHWNTH 111
                      899***************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.1E-19563IPR009057Homeodomain-like
PROSITE profilePS5129413.848961IPR017930Myb domain
SuperFamilySSF466896.36E-2611108IPR009057Homeodomain-like
SMARTSM007178.0E-111363IPR001005SANT/Myb domain
PfamPF002494.4E-131461IPR001005SANT/Myb domain
CDDcd001671.89E-71661No hitNo description
PROSITE profilePS5129425.96162116IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.2E-2464116IPR009057Homeodomain-like
SMARTSM007171.5E-1466114IPR001005SANT/Myb domain
PfamPF002492.7E-1470111IPR001005SANT/Myb domain
CDDcd001677.04E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MGRQPCCDKV GLKKGPWTAE EDQKLVSFLL GNGQCCWRAV PKLAGLLRCG KSCRLRWTNY  60
LRPDLKRGLL SEAEEKTVID LHEQLGNRWS KIASQLPGRT DNEIKNHWNT HIKKKLRKMG  120
IDPVTHKPLH PAPANPPPLP ADGDGSPEEE EGVEDKTSAA VLGSATTSTG TDGGGGHDVF  180
CTDEVPMLHL DDIVLPGVDV GTATTGSPFS ESSATSSSSS YSASASSGGI DEEWLGSIME  240
WPESMYLVGL DVDDMVTAAA AATATSSSWE FEDPFNTYQR IALFDHGHEL TWA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-28121165108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB09G16260.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0646791e-178AK064679.1 Oryza sativa Japonica Group cDNA clone:002-115-H05, full insert sequence.
GenBankY113511e-178Y11351.1 O.sativa mRNA for myb factor, 1402 bp.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006660610.10.0PREDICTED: protein ODORANT1-like
TrEMBLJ3MX970.0J3MX97_ORYBR; Uncharacterized protein
STRINGOB09G16260.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66230.14e-84myb domain protein 20