PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB09G15010.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARF
Protein Properties Length: 1529aa    MW: 171892 Da    PI: 6.3127
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB09G15010.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.11.2e-16146250199
                   EEEE-..-HHHHTT-E...E--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
            B3   1 ffkvltpsdvlksgrl...vlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                   f k lt+sd+ + g++   ++++ + +++      + +++ s+t+  +d +g +W++++iy   +  + lt+GW+ Fvk+++L +gD+vvF+  +++
  OB09G15010.1 146 FAKMLTQSDAISGGMFshfSVSRYCSKTIfrrldcSTDPP-SQTILAKDVHGVVWKFRHIYHDMPLCHRLTTGWSTFVKQKKLVAGDSVVFM--RTK 239
                   6778888888888654333545444444488888744444.469***************998888889************************..457 PP

                   EE..EEEEE-S CS
            B3  89 efelvvkvfrk 99 
                   ++ l+v+++r 
  OB09G15010.1 240 NGDLRVGIRRG 250
                   8888****985 PP
2Auxin_resp108.19.4e-36309392183
    Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                   aa+ a ++++FevvY+Prast+eF+vk+  v +a+++++ +GmRfkmafe+edss++++ +Gtv++v+++dpvrWpnS+Wr Lk
  OB09G15010.1 309 AANLAVSGQPFEVVYYPRASTPEFCVKAGPVIAAMRTQWLAGMRFKMAFESEDSSRISWfMGTVSAVQAADPVRWPNSPWRILK 392
                   688999***************************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.9E-26136251IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.8E-20142249IPR015300DNA-binding pseudobarrel domain
CDDcd100174.32E-15145249No hitNo description
PfamPF023621.7E-14146250IPR003340B3 DNA binding domain
SMARTSM010194.8E-11146251IPR003340B3 DNA binding domain
PROSITE profilePS5086310.912186251IPR003340B3 DNA binding domain
PfamPF065073.1E-31309392IPR010525Auxin response factor
SuperFamilySSF525403.94E-49664958IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009313.5E-44709983IPR002182NB-ARC
Gene3DG3DSA:3.40.50.3001.2E-7715847IPR027417P-loop containing nucleoside triphosphate hydrolase
PRINTSPR003644.8E-11718733No hitNo description
PRINTSPR003644.8E-11793807No hitNo description
PRINTSPR003644.8E-11894908No hitNo description
SuperFamilySSF520581.87E-3610161218IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.101.2E-1610421197IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.104.9E-1513301520IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF520581.87E-3613351519IPR032675Leucine-rich repeat domain, L domain-like
PRINTSPR003644.8E-1113811397No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0043531Molecular FunctionADP binding
Sequence ? help Back to Top
Protein Sequence    Length: 1529 aa     Download sequence    Send to blast
MESEGDIPSS CGNERFRKMA TLVDSAAKER ERENDKCLDP QLWHACAGDM VQMPPVNSKV  60
YYFPQGHEEH AHAQGQGPVE FPAGRVPALV LCRVAGVRFM AEPDTDEVFA KIRLVPVRAN  120
EQGYPADADA DDGIDAAAQE EKPASFAKML TQSDAISGGM FSHFSVSRYC SKTIFRRLDC  180
STDPPSQTIL AKDVHGVVWK FRHIYHDMPL CHRLTTGWST FVKQKKLVAG DSVVFMRTKN  240
GDLRVGIRRG KKGGVGGPKL LPPPLLPEIA NYGGFPMFLR SDDDSNKMAA AAASGKVRAR  300
VRPEEVVEAA NLAVSGQPFE VVYYPRASTP EFCVKAGPVI AAMRTQWLAG MRFKMAFESE  360
DSSRISWFMG TVSAVQAADP VRWPNSPWRI LKVSWDEPYL LWNVKRVSPW SVELVLNKPA  420
IHLAPFSPSM KRPREPLYLD LSTIDDQFPT PMFGGNPIAR GIGTPTGEQG AKHAQFVESV  480
DSQSRFKYHF DREVDSIGED FSTSRYWYLA IQKEWRPDNT ELTGEGTSGP AWNSIVQTKT  540
YQYLPNVEQW MQDKPVMLQR ALSRMHDLVN VAELWVHKDA VARLLQEAKD EVYSAENLLD  600
ELDYYELQSK VNQNTNPFRF PLHFEILMDW IHTNIDHLIG QMGNLGLQDM RHMSMDKSLH  660
QKVDLFHEET IVGRGKDLME LLIRVLDFQG RSSTSDREQA SCTSVLDLDQ TRSENVCVLP  720
IVGSGGVGKT TLVHQIFNEK RIQDHFDQQI WLCVSDGFDE KKLITRLLCS LADNELKSDD  780
LSCLQRFLTN GIIHHSKRFL LVLDDMQEDV CKEEFNGWKG FLAPLECARP GSTILVTTRS  840
LKVAEHLGTK KHFVLDGLPE ESLWELFRMH AFGSDYTNRN QELEGIGRSI VARLNGSSLG  900
AKILGRLLSL KLDGIYWKSI LESELWDLPH QEVISSNPAL LLSYQYMPSP LRHCFSFCSL  960
YPKGYSLEAE LLVNCWVAVG LVAPYGDMLA ADIGHLYFQQ LVDRSFLQRV TSSKYVMHGL  1020
LYDMAHQISS SECFVIKGSG DLSRIPPKVR HVSILNYSGL SSSDLESLQN YSTLRSVVCI  1080
GINSDALTAS VLETWFNHLT NIRMLKFISC QPKEIPGNVG NLICLRYLDI SSCELEVLPD  1140
SFWRLHKLEI LDAQNCRFDC VPKEIVKLVN LRKVRLKGGL IDQLGCVPGV GKLIFLQEMP  1200
YYAVDDTPGR RIEELENMNH LRGALEISGL HHVTGKEQAA GASLDKKIHL DTLTLSWHDS  1260
IRPDKHNSNL EMEVLESLRP SPSIKNLEMR FYMGSGFNPS WFYMGSEFHP IWFLYGKEDE  1320
PISGRLESLS ISSCPNIVSL FVTETSSSSS NGSSPVFRSL TKLCITWCRK LRSLDNLLDP  1380
LLLPKIRVIQ ISNCEELASL PTDQLGEFAH LEDLEVSHCW SLGWERGLTL PSSLKSLKLE  1440
ACGEPMDPAL SRGLRGLPAI TTLELQFCSG LESIGAEVWS GLTSLRRLKI FCCQELSSIG  1500
GAESIARVEE VDIRHCPKLT ELEQPFQRG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A4e-644141322353Auxin response factor 1
4ldy_B4e-644141322353Auxin response factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB09G15010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006660573.10.0PREDICTED: putative disease resistance protein RGA3
TrEMBLJ3MWX20.0J3MWX2_ORYBR; Auxin response factor
STRINGOB09G15010.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1409969
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28350.11e-138auxin response factor 10