PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB09G12360.1

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 255aa MW: 28369.2 Da PI: 7.5176

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB09G12360.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.9	7.9e-05	162	181	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+Fsr nL+ H+ OB09G12360.1 162 FVCPVCCKTFSRYNNLQMHM 181 89*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	6.92E-6	149	184	No hit	No description
PROSITE profile	PS50157	10.18	162	189	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	6.3E-6	162	181	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	164	184	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MANPSKDHLI FPFQRSLIPA DQSASPYNSL PKKEETIPLL SLLPSTHDHN KIHGCGHGYK 60 QEKEEEVMED VDISLQIGLP SPTSTGSLDL SKNHLHALGA ATTTSQELDG DGDHKVGAVE 120 DGEEEEEASD DLCLDYFSIG KLTKGKYWIP TPTQILIGPT HFVCPVCCKT FSRYNNLQMH 180 MWGHGSQYRR GPESLRGTQP AGMLRLACFC CAAGCRNNVD HPRARPLKDF RTLQTHYKRK 240 HCAKPFLCRK CGKAL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB09G12360.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC090054	1e-106	AC090054.2 Oryza sativa chromosome 9 clone PAC0645D04, complete sequence.
GenBank	AP006527	1e-106	AP006527.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0603H10.
GenBank	AP006727	1e-106	AP006727.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0645D04.
GenBank	AP014965	1e-106	AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBank	CP012617	1e-106	CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006661076.1	0.0	PREDICTED: zinc finger protein WIP2
Swissprot	Q9SVY1	3e-76	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	J3MW57	0.0	J3MW57_ORYBR; Uncharacterized protein
STRING	OB09G12360.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP586	38	170

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	8e-73	C2H2 family protein

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]