PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB09G10870.1

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

FAR1

Protein Properties

Length: 941aa MW: 109945 Da PI: 7.4575

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB09G10870.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	75.7	9.4e-24	203	299	2	91
FAR1 2 fYneYAkevGFsvrkskskks..krngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 f+n+YA +GFsv++++s++s krn+ei++ tf+C+k+gk +++ ++ +++r+t+++ +t+Ck+ l++ ++ ++ e+t+l+leHnHel+ OB09G10870.1 203 FFNFYALLAGFSVVNAHSYHSskKRNREIIRVTFKCNKQGKGDDQGNSkeiekmVVSQRNTSKVIQTDCKCVLVILER-NKLCEITRLDLEHNHELS 298 9****************999899*************99999889999999999************999.9**************8 PP FAR1 91 p 91 p OB09G10870.1 299 P 299 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.9E-22	203	299	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	7.2E-29	419	511	IPR018289	MULE transposase domain
Pfam	PF04434	2.3E-6	701	736	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	9.903	701	737	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	9.1E-8	712	739	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 941 aa Download sequence Send to blast
MEDFSKTSGV FTQQDLLESF INSDFHISSS SINSGSGQTI VNPSCAYRKQ DLLQLLDQDN 60 IPGPFTSYTS LMEQIISSQN SMLDGIDDIP RKDTAKMENN IIQDEDEEIE HWSLDLFNLQ 120 QNEKETNSMN KNLNDSVQSD IHHCENQHCD DVQNQDDVTE EDIEQYLIEE QLQASKGNNA 180 EVDRKYIPEI GMKFKSIDEA QHFFNFYALL AGFSVVNAHS YHSSKKRNRE IIRVTFKCNK 240 QGKGDDQGNS KEIEKMVVSQ RNTSKVIQTD CKCVLVILER NKLCEITRLD LEHNHELSPQ 300 EVVRFLRSHK YLSSEEKLLI RTLKECHIPT RNMIVILSFL RGVLTSLSYT KKDISNVRTS 360 INRETSNNDM MQVLQFFKKK EEQDSNFFYE FDLDDDRRVK NLFWTNGRSI DWYAKFGDCV 420 SFDTTFLTNR YNLPFAPVGI SGHGNTIIFG CAFLHDETTE TFKWLFTAFL KAMSGKQPCT 480 VIADQDGAMR SAIAQIFPNS KYRNCLFHIV SKALNRSGSL FKKKKGLYAE YDDIINNSLT 540 EEEFVFLWKD MIERYDLHDI NFLQNMWENR KRFIPVYFKK DFCPFIHSIA LSEGTNSRFK 600 RNIGPQYSTT NFMIEYDRVM DTIQNLEQQD DHISRTKKPS SFWSHFYIEY QAVQLYNSKI 660 FKKFQVQLKS TTRLQVEEVE KMKQVFVANN QLVQEVRSRK YLVLIDAVLE KFSCVCAMFE 720 KDGILCSHIL KVMLDLNISK IPKKYIISRW RKKQSHSEVQ SSKRIILVSE SSTLRFNILS 780 RKCAEITSIA AKQKETYEFF MEEFDKIQNA LSDMNSEKKN EESVHIDQIF KVNVNYEALQ 840 QPEELRDPDI AKSKGRPQQR YKTIRERIED RKVNHCSHCG RTDHTFPKCT FKHMEFNLPS 900 KKKRKSTNQP QQHFKTMKKR NESSVGKSGY NEEHGNQENN G

Sequence ? help Back to Top

Protein Sequence Length: 941 aa Download sequence Send to blast

MEDFSKTSGV FTQQDLLESF INSDFHISSS SINSGSGQTI VNPSCAYRKQ DLLQLLDQDN  60
IPGPFTSYTS LMEQIISSQN SMLDGIDDIP RKDTAKMENN IIQDEDEEIE HWSLDLFNLQ  120
QNEKETNSMN KNLNDSVQSD IHHCENQHCD DVQNQDDVTE EDIEQYLIEE QLQASKGNNA  180
EVDRKYIPEI GMKFKSIDEA QHFFNFYALL AGFSVVNAHS YHSSKKRNRE IIRVTFKCNK  240
QGKGDDQGNS KEIEKMVVSQ RNTSKVIQTD CKCVLVILER NKLCEITRLD LEHNHELSPQ  300
EVVRFLRSHK YLSSEEKLLI RTLKECHIPT RNMIVILSFL RGVLTSLSYT KKDISNVRTS  360
INRETSNNDM MQVLQFFKKK EEQDSNFFYE FDLDDDRRVK NLFWTNGRSI DWYAKFGDCV  420
SFDTTFLTNR YNLPFAPVGI SGHGNTIIFG CAFLHDETTE TFKWLFTAFL KAMSGKQPCT  480
VIADQDGAMR SAIAQIFPNS KYRNCLFHIV SKALNRSGSL FKKKKGLYAE YDDIINNSLT  540
EEEFVFLWKD MIERYDLHDI NFLQNMWENR KRFIPVYFKK DFCPFIHSIA LSEGTNSRFK  600
RNIGPQYSTT NFMIEYDRVM DTIQNLEQQD DHISRTKKPS SFWSHFYIEY QAVQLYNSKI  660
FKKFQVQLKS TTRLQVEEVE KMKQVFVANN QLVQEVRSRK YLVLIDAVLE KFSCVCAMFE  720
KDGILCSHIL KVMLDLNISK IPKKYIISRW RKKQSHSEVQ SSKRIILVSE SSTLRFNILS  780
RKCAEITSIA AKQKETYEFF MEEFDKIQNA LSDMNSEKKN EESVHIDQIF KVNVNYEALQ  840
QPEELRDPDI AKSKGRPQQR YKTIRERIED RKVNHCSHCG RTDHTFPKCT FKHMEFNLPS  900
KKKRKSTNQP QQHFKTMKKR NESSVGKSGY NEEHGNQENN G

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB09G10870.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025881725.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	J3MVQ9	0.0	J3MVQ9_ORYBR; Uncharacterized protein
STRING	OB09G10870.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-85	FAR1-related sequence 5