PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB08G30610.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 336aa    MW: 36480.5 Da    PI: 8.3889
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB08G30610.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.62.7e-07164186123
                   EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                   + C+ Cgk F+r  nL+ H+r H
  OB08G30610.1 164 HYCQVCGKGFKRDANLRMHMRAH 186
                   68*******************99 PP
2zf-C2H212.50.00045251274123
                   EEETTTT.EEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCpdCg.ksFsrksnLkrHirtH 23 
                   y+C+ Cg k+Fs  s+L++H + +
  OB08G30610.1 251 YVCNRCGrKHFSVLSDLRTHEKHC 274
                   9*******************9876 PP
3zf-C2H211.20.0012283298621
                   TTEEESSHHHHHHHHH CS
       zf-C2H2   6 CgksFsrksnLkrHir 21 
                   Cg+sFsrk+ L+ H+ 
  OB08G30610.1 283 CGTSFSRKDKLVGHLA 298
                   **************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.99E-6163189No hitNo description
Gene3DG3DSA:3.30.160.606.2E-7164194IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0034164186IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.653164191IPR007087Zinc finger, C2H2
PROSITE patternPS000280166186IPR007087Zinc finger, C2H2
SMARTSM00355140213246IPR015880Zinc finger, C2H2-like
SMARTSM0035536251277IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MAMVAASMAW TARAVFMADQ PHCHALLYNL SVLKDRVQQL HPLVVLAVGH NGPLDVSGAD  60
AIIQEIVAAA SSMMYAFQLL CDLGTAPSGP PQEGAAVKTN DDHHGGQMVT DQDDHLMQWQ  120
QNGSQHDYSS HAHAPPVMFS GGETAATDTI IELDAAELLA KFTHYCQVCG KGFKRDANLR  180
MHMRAHGDEY KSKAALSNPA KGGGEEGAAA RKYSCPQEGC RWNRRHAKFQ PLKSVICAKN  240
HYKRSHCPKM YVCNRCGRKH FSVLSDLRTH EKHCGDHRWL CSCGTSFSRK DKLVGHLALF  300
AGHQPVMPLD AKRQRSSASV AGNVDGTSAI GMGAAA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00522DAPTransfer from AT5G22890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB08G30610.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0632900.0AK063290.1 Oryza sativa Japonica Group cDNA clone:001-113-E02, full insert sequence.
GenBankAP0045870.0AP004587.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0543D10.
GenBankAP0055440.0AP005544.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0604E01.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649514.10.0protein SENSITIVE TO PROTON RHIZOTOXICITY 2
SwissprotQ0WT244e-95STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBLJ3MVD00.0J3MVD0_ORYBR; Uncharacterized protein
STRINGOB08G30610.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74413251
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.11e-95C2H2 family protein