PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB08G29560.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB | ||||||||
Protein Properties | Length: 291aa MW: 33257.1 Da PI: 9.7017 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.7 | 2.3e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde+lv +++ +G g+W++ ++ g+ R++k+c++rw +yl OB08G29560.1 14 KGAWTKEEDERLVSYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 56.7 | 5.4e-18 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T++Ed+l+++++ +lG++ W++Ia++++ gRt++++k++w+++ OB08G29560.1 67 RGNFTADEDDLIIKLHSLLGNK-WSLIAARLP-GRTDNEIKNYWNTH 111 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.0E-24 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.191 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.67E-29 | 13 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.3E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.5E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.38E-10 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 28.308 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-27 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.7E-17 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-16 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.53E-12 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 291 aa Download sequence Send to blast |
MGRSPCCEKE HTNKGAWTKE EDERLVSYIR AHGEGCWRSL PKAAGLLRCG KSCRLRWINY 60 LRPDLKRGNF TADEDDLIIK LHSLLGNKWS LIAARLPGRT DNEIKNYWNT HIRRKLLGRG 120 IDPVTHRPVN AAAAATISFQ PQAPPPTSPE KEQLDKPPRC PDLNLDLCIS PPSSQEYDDE 180 DDDVKPAKRA PELQPRRGGG LCFGCSIGLQ KECNCISRGN SFLGLPPRRR RPLLRLQHRP 240 PEGVQLHQQR QQLPRPQGWH ARLQKPPHEI ILQIKSPHDF YSSPLIFWVL W |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-27 | 13 | 116 | 26 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 228 | 235 | RRRPLLRL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that regulates negatively genes involved in anthocyanin biosynthesis. {ECO:0000269|PubMed:7920701}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB08G29560.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HF679407 | 1e-145 | HF679407.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB1 protein. | |||
GenBank | JQ255477 | 1e-145 | JQ255477.1 Saccharum hybrid cultivar Co 86032 MYB42 (MYB42) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015695776.1 | 1e-164 | PREDICTED: myb-related protein Zm38-like | ||||
Swissprot | P20025 | 1e-108 | MYB38_MAIZE; Myb-related protein Zm38 | ||||
TrEMBL | J3MV25 | 0.0 | J3MV25_ORYBR; Uncharacterized protein | ||||
STRING | OB08G29560.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP116 | 37 | 448 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38620.1 | 8e-92 | myb domain protein 4 |
Publications ? help Back to Top | |||
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