PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB08G29160.1 | ||||||||
Common Name | LOC102709392 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | TCP | ||||||||
Protein Properties | Length: 371aa MW: 38354.7 Da PI: 5.831 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 115.9 | 5.2e-36 | 70 | 169 | 6 | 94 |
TCP 6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec........eaesssssasnsssg...... 88 r+ ++hTkv+gR+RR+R++a caar+F+L++eLG+++d++ti WL+qq+ pai+++tgt++ +a ++ ++sssss g OB08G29160.1 70 PRNRDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLMQQSDPAIIAATGTGTVPAIATtvngvlriPTQSSSSS------Gpassav 160 6999********************************************************666663332222233222222222......1121122 PP TCP 89 ....kaaksa 94 + ++++ OB08G29160.1 161 vdgeE-SSAK 169 33321.1111 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 26.343 | 72 | 126 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 3.9E-30 | 72 | 164 | IPR005333 | Transcription factor, TCP |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008361 | Biological Process | regulation of cell size | ||||
GO:0048364 | Biological Process | root development | ||||
GO:1900056 | Biological Process | negative regulation of leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 371 aa Download sequence Send to blast |
MEAQAQDKAE EGEEEGTRPH AQVGAVGGGG GGGAAAAMAV GAIPMNSWLV PKPEPVEFFG 60 GMAVVRKPPP RNRDRHTKVE GRGRRIRMPA ACAARIFQLT RELGHKSDGE TIRWLMQQSD 120 PAIIAATGTG TVPAIATTVN GVLRIPTQSS SSSGPASSAV VDGEESSAKR RRKLQPTRAV 180 AGASPLATAA PAAYYPVIGD PLLQGSAGAA ISVQSGLAPI TAAGAPPRLA PVFAVPPPGG 240 PAVAGGNRMI PQATAVWMVP QPAGAAGAGN QPTQFWAIQS APQLVNFAGA QFPTAINIAD 300 FQQQQQPQHP VSTTIVQHSN SGEHPVHVQF SGADSHEQQR RGRKEGSGVD HPEEDEDDDD 360 DEPVSDSSPE E |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681}. | |||||
UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681, ECO:0000269|PubMed:9338963}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00667 | PBM | Transfer from GSVIVG01027588001 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB08G29160.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012616 | 0.0 | CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006659652.1 | 0.0 | PREDICTED: transcription factor PCF2 | ||||
Swissprot | A2YXQ1 | 0.0 | PCF2_ORYSI; Transcription factor PCF2 | ||||
Swissprot | Q6ZBH6 | 0.0 | PCF2_ORYSJ; Transcription factor PCF2 | ||||
TrEMBL | J3MUY5 | 0.0 | J3MUY5_ORYBR; Uncharacterized protein | ||||
STRING | OB08G29160.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3912 | 31 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45680.1 | 4e-42 | TCP family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 102709392 |
Publications ? help Back to Top | |||
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