PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB08G28690.1
Common NameLOC102713488
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 525aa    MW: 57406.7 Da    PI: 9.9843
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB08G28690.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2612.7e-19366416155
           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                   ++y+GVr+++ +g+W+AeIrdp+    + +r++lg+  taeeAa+a++aa+ +++g
  OB08G28690.1 366 PRYRGVRQRP-WGKWAAEIRDPV----KaARVWLGTLHTAEEAARAYDAAAVRFKG 416
                   68********.**********64....55**********************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF102501.3E-1982199IPR019378GDP-fucose protein O-fucosyltransferase
PfamPF008475.9E-12366415IPR001471AP2/ERF domain
CDDcd000184.64E-16366426No hitNo description
PROSITE profilePS5103224.329367424IPR001471AP2/ERF domain
SMARTSM003801.8E-32367430IPR001471AP2/ERF domain
SuperFamilySSF541713.27E-20367426IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.5E-30367425IPR001471AP2/ERF domain
PRINTSPR003671.8E-10368379IPR001471AP2/ERF domain
PRINTSPR003671.8E-10390406IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
MSSSAWWAHG RIRILLPALF LAPALFFLLS PPSSPPFFTA PAAREESRSG SRVIWAQRRV  60
VEWRPCGWWR AAMPAPSRRN GYIRIDCYGG LNQLRRDLCD GIAVARLLNA TMVLPKFEVA  120
AYWNESSGFA DVFDVDYFIQ QTRGYVEVVK DMPEQIASKE PFKVDCSKRK GHFDYVETVL  180
PALLEHQYIS LTPAMSQRRD SAIEAARGED RKALTAKGTR VDRLREASDQ GHHHRRRKRE  240
EEASSPPRHD DEPPPTQRPV GTTATTAGAR VSGGGGGGVW RSSVVAEDVE LAVIVAALTH  300
VISSTAAEPT TAVPPVTAAQ QRAATATMFG QQGMHQRGFP LPSSGSAAAT PSPLPEQHQQ  360
GAVARPRYRG VRQRPWGKWA AEIRDPVKAA RVWLGTLHTA EEAARAYDAA AVRFKGSKAK  420
VNFPDQVFAA SRHVQLPQRH HHHLAAAGTA AVAPKEEFPD LSRYAHILQS GDVEYGFHAA  480
GPAGLTPPGQ SSSSSSMPPA PPSEDHRGED LNQEKKPRFG PSNLI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-20368427666ATERF1
3gcc_A2e-20368427666ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB08G28690.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3418270.0AY341827.1 Oryza sativa (japonica cultivar-group) AP2 domain-containing protein AP29 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006660332.10.0PREDICTED: uncharacterized protein LOC102713488
TrEMBLJ3MUT80.0J3MUT8_ORYBR; Uncharacterized protein
STRINGOB08G28690.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP736466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.19e-24ERF family protein