PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB08G27870.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 399aa    MW: 43444.9 Da    PI: 7.461
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB08G27870.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.23.5e-09209256455
                   HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   +h+ +Er RR+ri +++  L++l+P +    +k   Ka +L + ++Y++sLq
  OB08G27870.1 209 SHSLAERVRRERISQRMKVLQDLVPGC----NKVIGKALMLDEIINYVQSLQ 256
                   8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.36E-16203270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.68E-10203260No hitNo description
Gene3DG3DSA:4.10.280.107.7E-16205268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.301205255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-6209256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.0E-10211261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MEGGRGGAGG AGDYISSLLN SSPRLDFGLL AXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  60
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ASREASSVSD PASAMKDAAN AKKRKAPGGA  120
KGKGKEPPLS TSCQQVGEEK ASDGKRCKTG DAGEKKDAPV KPKAEQAGSD SSVEDGGGQK  180
QGKGKNAKPV EPPKDYVHVR ARRGQATDSH SLAERVRRER ISQRMKVLQD LVPGCNKVIG  240
KALMLDEIIN YVQSLQRQVE FLSMKLATVN PLDFSNLPTL LQKDMFQACG PSASSVFSLE  300
SSNSAFPFSE QGDVFQQFAP NSMESQCTLN QLDLALSQAT NAQYAFQDGT ASANLQQRNF  360
WEDDLQSVFH IENGQSQENG VSAPSFHGQL QAGHMKMEF
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB08G27870.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0720410.0AK072041.1 Oryza sativa Japonica Group cDNA clone:J013105J01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015695672.10.0PREDICTED: transcription factor bHLH78-like, partial
TrEMBLJ3MUK60.0J3MUK6_ORYBR; Uncharacterized protein
STRINGOB08G27870.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91938137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.16e-53bHLH family protein