PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB08G27680.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 104aa    MW: 11484.3 Da    PI: 12.3952
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB08G27680.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.31.2e-152676256
           AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
                  g +GVr++  +grW+AeIr+p   g +  r ++g+f  +  Aa a++aa  +++g+
  OB08G27680.1 26 GLRGVRRRL-WGRWAAEIRVP---G-TqSRLWIGTFPCPRTAALAYDAALYCFHGH 76
                  579***877.**********8...3.35**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.1122687IPR001471AP2/ERF domain
PfamPF008472.7E-102776IPR001471AP2/ERF domain
PRINTSPR003671.7E-62738IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-152787IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.9E-212887IPR001471AP2/ERF domain
SMARTSM003801.7E-162893IPR001471AP2/ERF domain
PRINTSPR003671.7E-64965IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 104 aa     Download sequence    Send to blast
RRRRLLPVLA SLHHGATAAA PPKNLGLRGV RRRLWGRWAA EIRVPGTQSR LWIGTFPCPR  60
TAALAYDAAL YCFHGHSPPG GRAFNFPFAP RRLYIDARSS SAGP
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB08G27680.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006660297.13e-67PREDICTED: ethylene-responsive transcription factor ERF023-like
SwissprotQ9C9I83e-19ERF20_ARATH; Ethylene-responsive transcription factor ERF020
TrEMBLJ3MUI73e-67J3MUI7_ORYBR; Uncharacterized protein
STRINGOB08G27680.16e-68(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54442555
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71520.17e-14ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]