PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB08G27600.1

Common Name

LOC102700082

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB

Protein Properties

Length: 307aa MW: 33835.3 Da PI: 8.0543

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB08G27600.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	37.2	6.8e-12	16	61	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g WT+eEde l + v+++G++ W++I ++ + R +k+c++rw + OB08G27600.1 16 KGQWTAEEDEVLRRHVREHGPREWSSIEARGLLPRNGKSCRLRWVN 61 799**********************8876667********87 PP
2	Myb_DNA-binding	37	7.9e-12	72	112	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++T+eE+ ++ ++ G++ W++I++ + gRt++++k++w OB08G27600.1 72 KFTQEEERMVIEMQAKVGNK-WALISKQLT-GRTDNDVKNFWS 112 79****************.****9.*********6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	18.213	11	67	IPR017930	Myb domain
SMART	SM00717	5.6E-9	15	65	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.2E-25	15	111	IPR009057	Homeodomain-like
Pfam	PF00249	4.2E-10	16	61	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	8.2E-18	17	70	IPR009057	Homeodomain-like
CDD	cd00167	2.34E-11	19	63	No hit	No description
PROSITE profile	PS51294	16.374	68	119	IPR017930	Myb domain
SMART	SM00717	1.5E-11	69	117	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.9E-17	71	117	IPR009057	Homeodomain-like
CDD	cd00167	2.17E-9	72	115	No hit	No description
Pfam	PF00249	1.2E-10	72	112	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence Send to blast
MVAQRRRGGR PAAARKGQWT AEEDEVLRRH VREHGPREWS SIEARGLLPR NGKSCRLRWV 60 NKLQPGLRTG CKFTQEEERM VIEMQAKVGN KWALISKQLT GRTDNDVKNF WSTRKKKLAR 120 MSKAAAPAPP PSRRRSSSSS RALPSTPTES CSLMKDPFQE SSSSYHVGES SHQACTAMEN 180 QLTTDAQSPG RLPAYECSLG LPAPESLTGL PAPESPSWPS SGELALVPAA ECMRNPAPLM 240 LYPAASGDMA SADHSGYGDE LACLQPVLEF QPIQPYGLED DMVFDELSPA TLDFFDQPPP 300 PPPLIKW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	5e-22	16	118	27	128	MYB TRANSFORMING PROTEIN
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB08G27600.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006660292.1	0.0	PREDICTED: transcription factor MYB21-like
Swissprot	Q0JB89	2e-54	MYB58_ORYSJ; Probable transcription factor MYB58
TrEMBL	J3MUH9	0.0	J3MUH9_ORYBR; Uncharacterized protein
STRING	OB08G27600.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5700	33	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60460.1	1e-46	MYB family protein

Link Out ? help Back to Top
Entrez Gene	102700082

Publications ? help Back to Top
Yilmaz A, et al. GRASSIUS: a platform for comparative regulatory genomics across the grasses. Plant Physiol., 2009. 149(1): p. 171-80 [PMID:18987217]