PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OB08G27360.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 234aa MW: 25873.6 Da PI: 6.2594 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 115.1 | 4.5e-36 | 68 | 166 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 +CaaC++lrr+Ca+dCvlap fpa++p+++ +vh +FGasnv +ll++lp er +a++++++eA +r++dPvyG++g+i++lq +++ ++ ela++ OB08G27360.1 68 RCAACRYLRRRCADDCVLAPFFPASRPHRYFCVHTVFGASNVARLLQSLPMAERGNAANTMAMEAYWRVQDPVYGCTGIINRLQDEIRAVQCELART 164 6*********************************************************************************************998 PP DUF260 98 ke 99 ++ OB08G27360.1 165 QA 166 76 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.575 | 67 | 168 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.2E-36 | 68 | 165 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 234 aa Download sequence Send to blast |
MDSSITRLQL ADLLLPCMPC KYIRWKDLGV SSPNPAKIVR SKTGDIMPEN DDDDDRPPPP 60 PPHPAARRCA ACRYLRRRCA DDCVLAPFFP ASRPHRYFCV HTVFGASNVA RLLQSLPMAE 120 RGNAANTMAM EAYWRVQDPV YGCTGIINRL QDEIRAVQCE LARTQALLAI ALAAAASRQL 180 QPPPPPPPQQ DRAGGRPVVV VVRGQQQQEE EEEQSPPAPS LMDPADEYLN LDGL |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 8e-28 | 69 | 167 | 12 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 8e-28 | 69 | 167 | 12 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | OB08G27360.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK107078 | 7e-68 | AK107078.1 Oryza sativa Japonica Group cDNA clone:002-121-F06, full insert sequence. | |||
GenBank | AP004708 | 7e-68 | AP004708.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0700D12. | |||
GenBank | AP004761 | 7e-68 | AP004761.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0686C03. | |||
GenBank | AP014964 | 7e-68 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012616 | 7e-68 | CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006660281.1 | 1e-90 | PREDICTED: LOB domain-containing protein 24-like | ||||
TrEMBL | J3MUF5 | 1e-169 | J3MUF5_ORYBR; Uncharacterized protein | ||||
STRING | OB08G27360.1 | 1e-170 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5282 | 35 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G30130.1 | 1e-23 | LBD family protein |