PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB08G26650.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 270aa    MW: 29545.3 Da    PI: 8.4925
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB08G26650.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.62.2e-0593112120
                   EEETTTTEEESSHHHHHHHH CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                   ++Cp C k+F+r  n++ H+
  OB08G26650.1  93 FSCPVCFKTFNRYNNMQMHM 112
                   89*****************9 PP

2zf-C2H213.30.00025179199323
                   ETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                   C +Cgk F  k + ++H +++
  OB08G26650.1 179 CRKCGKAFAVKGDWRTHEKNC 199
                   *****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.05E-589115No hitNo description
Gene3DG3DSA:3.30.160.603.6E-693112IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.3893115IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.6493120IPR007087Zinc finger, C2H2
PROSITE patternPS00028095115IPR007087Zinc finger, C2H2
SuperFamilySSF576671.69E-6161197No hitNo description
Gene3DG3DSA:3.30.160.602.3E-5163197IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.621177197IPR007087Zinc finger, C2H2
SMARTSM0035582177197IPR015880Zinc finger, C2H2-like
SMARTSM00355220203226IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MEPHIPGRSS TCTYSPCTQQ SHLADLLSGL SGRAGAGVEH EDDEEDCKVD GGGSGGGDEI  60
VPLGFPSTPI GKLNKGQYWI PTPSQILIGP TQFSCPVCFK TFNRYNNMQM HMWGHGSQYR  120
KGPESLRGVQ PTAMLRLPCY CCAAGCRNNI AHPRARPLKD FRTLQTHYKR KHGLKPFLCR  180
KCGKAFAVKG DWRTHEKNCG KLWYCLCGSE FKHKRSLKDH ARAFGHGHAA GFSFDDDDDG  240
AVSDIDHDSY SAAAARASAS SSLPRSSGHC
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB08G26650.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2875660.0AK287566.1 Oryza sativa Japonica Group cDNA, clone: J065027L04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006660256.10.0PREDICTED: zinc finger protein WIP2-like
SwissprotQ9SVY11e-114ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLJ3MU840.0J3MU84_ORYBR; Uncharacterized protein
STRINGOB08G26650.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58638170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-105C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]