PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB08G25950.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | Dof | ||||||||
Protein Properties | Length: 251aa MW: 27248.2 Da PI: 6.5161 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 118.6 | 2.4e-37 | 38 | 95 | 5 | 62 |
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +cprC+s++tkfCyynny++sqPr+fCk CrryWtkGG+lrnvPvGgg+rk+ ++s OB08G25950.1 38 GDPCPRCESRETKFCYYNNYNTSQPRHFCKCCRRYWTKGGTLRNVPVGGGTRKKPSTS 95 678**************************************************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 6.0E-25 | 38 | 88 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.164 | 39 | 93 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 9.9E-31 | 40 | 91 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 41 | 77 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MQEQQLEPGR RPAQQFATVD LRRPKGYAAP APPQASAGDP CPRCESRETK FCYYNNYNTS 60 QPRHFCKCCR RYWTKGGTLR NVPVGGGTRK KPSTSSPSSS SSSAASAAKR QKPSKKRRVT 120 PTEPTETSVL TPTAADSTKT ETTEATTEKT TSTTTTTKTT TPPVADTASE ITTELVVPAV 180 EEDSFTDLLQ PDSAAVTLGL DFADYPSLTK GLADPDLHFE WPPAAFDVAS YWPASTWFTD 240 PDPTAVFLDL P |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 88 | 111 | RKKPSTSSPSSSSSSAASAAKRQK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence at the MNF1-binding site. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00672 | SELEX | Transfer from GRMZM2G009406 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB08G25950.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK241364 | 6e-81 | AK241364.1 Oryza sativa Japonica Group cDNA, clone: J065152E11, full insert sequence. | |||
GenBank | AP004620 | 6e-81 | AP004620.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0605H02. | |||
GenBank | AP014964 | 6e-81 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012616 | 6e-81 | CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015696049.1 | 1e-144 | PREDICTED: LOW QUALITY PROTEIN: dof zinc finger protein MNB1A-like | ||||
Swissprot | P38564 | 3e-65 | MNB1A_MAIZE; Dof zinc finger protein MNB1A | ||||
TrEMBL | J3MU14 | 1e-180 | J3MU14_ORYBR; Uncharacterized protein | ||||
STRING | OB08G25950.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP140 | 37 | 367 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50410.1 | 1e-27 | OBF binding protein 1 |
Publications ? help Back to Top | |||
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