PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB08G25860.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 404aa    MW: 42632 Da    PI: 8.1686
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB08G25860.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.57.5e-061862251255
                   HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  OB08G25860.1 186 RREKISERMKLLQDLVPGC----SKVTGKALMLDEIINYVQSLQ 225
                   9*****************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.452174224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0011181230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.84E-12186242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.93E-7186229No hitNo description
Gene3DG3DSA:4.10.280.101.7E-12187241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MMDANGGNGF GVESNASPAH GGMAMAAWQW HGQMSGGSAC GAPPVQPGMD SLAWSSSVSP  60
CTSAAVVIAG DGAGSFLPPP AVAVRGGFGH FPVGSGGRVE RAVRPSSCSG AAGSGTASAG  120
AFAVAASTNH VSDNDDAQPP GDCSSDSKKK RRSGEITRTD HASASKVLAD SANDTECSKD  180
ANGELRREKI SERMKLLQDL VPGCSKVTGK ALMLDEIINY VQSLQRQVEF LSMKLSAVNP  240
RIDLDIESLV SKDVLRFPGP PPSAPFSFSQ EMMIPGLQLS RPAMLQGGIR GMIDQDLFSN  300
VMQKQQQNDK GAFREPQQHG MGQVSSDQKA DRSDTHINRM CIGQTAAELT GKKLIAYGKG  360
GGSHIQYMGC SCVQISELKL HRLRQHELQS TMARNSSDIG RKRN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1147151KKKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB08G25860.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9760594e-43EU976059.1 Zea mays clone 510028 DNA binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650276.11e-128transcription factor bHLH79
TrEMBLJ3MU050.0J3MU05_ORYBR; Uncharacterized protein
STRINGOB08G25860.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29093785
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.15e-34bHLH family protein