PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB08G25720.1

Common Name

LOC102716893

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 884aa MW: 95298.9 Da PI: 7.0636

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB08G25720.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13	0.00031	366	386	1	21
EEETTTTEEESSHHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHir 21 ++Cp C+k+F +s + Hi OB08G25720.1 366 FECPVCNKTFEEQSRYFGHIG 386 89************9999985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54171	5.89E-6	196	246	IPR016177	DNA-binding domain
Pfam	PF01429	4.6E-5	201	245	IPR001739	Methyl-CpG DNA binding
SMART	SM00355	0.98	317	340	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	319	340	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.046	366	388	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.369	366	393	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	368	388	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 884 aa Download sequence Send to blast
METELLPVVD LRVLSQSDLD ALAAASAHAV SPRSCPDANP LPPLKIDRAI FNESAGSRKQ 60 TFSRLRFGTA SSSSGSPSPA AKPRGNDKED SFIAHHLRLL FARGDPSFLS PIDQPESQTL 120 ALPAPPSPDP DLLTTNSRGV SVDLVNLALL VDPYDAELGK RTAGMTSESE LMGFIASLAG 180 QWVSQRMRRK FVDAAFFGDH LPSGWRLQLG IMRKDHKAWL HCFSYVSPKG QQFGTCKEVS 240 AYLMSLLGYP DLKTGNIENS NMQQRDLCAE DGVNVLGVQH QIGSSMDNQS ILPAASVTFS 300 SHSRDEDERG ADATDSYYCQ ECNTTFHGQS AYAHHLIAFH KVSSKRRKIN KNVKFGEPII 360 GKDGKFECPV CNKTFEEQSR YFGHIGAHAK YHGLTPEAFL QTFAGKVGSE SFSELSFSLQ 420 ELTGSPQQIE KTNASETRSQ HHNSSTKHGG NATRGIDLLN SNCPDNFNGH NQTWCRPEEI 480 PPTTDAPSTW SYRNDVMDGA DRTVPRIAPQ TNDHMDRISG FAEATDFNDQ AGRHQVFRPS 540 SFGTANNCQG QIVDRAMATS KHAEVNNSIK ARDANHNSCL NTISFPIATA NNETSAALND 600 GNGSRITGKG FNGSFSNNDG AASAVFSNSG VNNKMPGSLG VADRSSVAAR SFNAGYVNDN 660 SASEANNIGN KNNSMVYQTN LTMRPISPCD LQLGFSGQKQ QMFPGYGELR PAASGSPQLG 720 SMARNSSIPS RPPQTQFGSM ARTDALPTGS SQPGSLARPN LVPTGFSQFA SMTRPATSVP 780 PADPSQFGGM GRQTIGTTSE PTLVLGYAPQ MVNGPPTQLG WDLSLSRMVS EGVIPVLCIW 840 CNSQFHHFGP IDGQQSGSFG FICPACKEKM AGNHNTPNNG PWQT

Sequence ? help Back to Top

Protein Sequence Length: 884 aa Download sequence Send to blast

METELLPVVD LRVLSQSDLD ALAAASAHAV SPRSCPDANP LPPLKIDRAI FNESAGSRKQ  60
TFSRLRFGTA SSSSGSPSPA AKPRGNDKED SFIAHHLRLL FARGDPSFLS PIDQPESQTL  120
ALPAPPSPDP DLLTTNSRGV SVDLVNLALL VDPYDAELGK RTAGMTSESE LMGFIASLAG  180
QWVSQRMRRK FVDAAFFGDH LPSGWRLQLG IMRKDHKAWL HCFSYVSPKG QQFGTCKEVS  240
AYLMSLLGYP DLKTGNIENS NMQQRDLCAE DGVNVLGVQH QIGSSMDNQS ILPAASVTFS  300
SHSRDEDERG ADATDSYYCQ ECNTTFHGQS AYAHHLIAFH KVSSKRRKIN KNVKFGEPII  360
GKDGKFECPV CNKTFEEQSR YFGHIGAHAK YHGLTPEAFL QTFAGKVGSE SFSELSFSLQ  420
ELTGSPQQIE KTNASETRSQ HHNSSTKHGG NATRGIDLLN SNCPDNFNGH NQTWCRPEEI  480
PPTTDAPSTW SYRNDVMDGA DRTVPRIAPQ TNDHMDRISG FAEATDFNDQ AGRHQVFRPS  540
SFGTANNCQG QIVDRAMATS KHAEVNNSIK ARDANHNSCL NTISFPIATA NNETSAALND  600
GNGSRITGKG FNGSFSNNDG AASAVFSNSG VNNKMPGSLG VADRSSVAAR SFNAGYVNDN  660
SASEANNIGN KNNSMVYQTN LTMRPISPCD LQLGFSGQKQ QMFPGYGELR PAASGSPQLG  720
SMARNSSIPS RPPQTQFGSM ARTDALPTGS SQPGSLARPN LVPTGFSQFA SMTRPATSVP  780
PADPSQFGGM GRQTIGTTSE PTLVLGYAPQ MVNGPPTQLG WDLSLSRMVS EGVIPVLCIW  840
CNSQFHHFGP IDGQQSGSFG FICPACKEKM AGNHNTPNNG PWQT

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB08G25720.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK069097	0.0	AK069097.1 Oryza sativa Japonica Group cDNA clone:J023004M17, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006659517.1	0.0	PREDICTED: uncharacterized protein LOC102716893
TrEMBL	J3MTZ1	0.0	J3MTZ1_ORYBR; Uncharacterized protein
STRING	OB08G25720.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2687	14	19

Link Out ? help Back to Top
Entrez Gene	102716893