PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB08G24140.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 894aa    MW: 100213 Da    PI: 7.44
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB08G24140.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.65.9e-13951144
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44
                     + +WT+eEde l ++v+++   +W+ Ia  ++ +R +k+c++rw
     OB08G24140.1  9 KTPWTEEEDEVLRRGVREHRRQNWAEIALALP-RRGPKSCRLRW 51
                     579*****************************.*********** PP
2Myb_DNA-binding37.65.2e-1263101343
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksr 43 
                      ++T+eEd l+v+  + +G++ W+tIar++  gR+++ +k+r
     OB08G24140.1  63 AFTPEEDALIVEQQRVHGNK-WATIARCLT-GRSDNAVKNR 101
                      79******************.********9.*********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.964159IPR017930Myb domain
SMARTSM007174.1E-12857IPR001005SANT/Myb domain
SuperFamilySSF466891.03E-248101IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.2E-191162IPR009057Homeodomain-like
CDDcd001675.87E-121151No hitNo description
PfamPF139211.2E-131270No hitNo description
SMARTSM007173.9E-760108IPR001005SANT/Myb domain
PROSITE profilePS512949.99362110IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.8E-1363101IPR009057Homeodomain-like
CDDcd001671.66E-763101No hitNo description
PfamPF041363.0E-40196330IPR007265Conserved oligomeric Golgi complex, subunit 3
SuperFamilySSF747889.42E-5250489IPR016159Cullin repeat-like-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006886Biological Processintracellular protein transport
GO:0007030Biological ProcessGolgi organization
GO:0009860Biological Processpollen tube growth
GO:0048193Biological ProcessGolgi vesicle transport
GO:0005801Cellular Componentcis-Golgi network
GO:0005829Cellular Componentcytosol
GO:0016020Cellular Componentmembrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 894 aa     Download sequence    Send to blast
MAAGGGGRKT PWTEEEDEVL RRGVREHRRQ NWAEIALALP RRGPKSCRLR WSQPLSPELD  60
SRAFTPEEDA LIVEQQRVHG NKWATIARCL TGRSDNAVKN RPQVQPEMST MPLKAHTGDS  120
FGGLNAPLTE QQNAAIAALS RAVSERPFPA NLEKSLVKDG GAIVPEKEAA LEEGAMDAVL  180
VNTHQFYKWF SELESAMKSE VDDTLSLFEE LQSLHLSVAT KTKTLHDACD QLLLEKQRLI  240
EFAEALRSRL NYFDELENVS TSFYSQTMNI GNEQFLPLLK RLDDCISYVE NNPQYAESAV  300
YLVKFRQLQS RALGMIRSHV LSILKAASSQ VQAAIRGSGT AKNIVTEGVE ASLIYVRFKA  360
AASELKPILG EIESRSSRKE YTQILSECHS LFCEQRLYLI RGMVQQRISE FARKEALPSL  420
TRSGCAYLME ACQFEHQLFA HFFPASASEA SSIAPLMDPL CTYLYDTLRP RLIYEGNIDS  480
LCELVDILKV EVLGEQLSRR GESVAGLRPI LQRILADVHE RLAFCARTHI REEIANFRPS  540
DEDLDYPGKL ERSVDATASS NASGNSDIYV TWYRPLEKTV SCLSKLYHRL EPSVFTGLAQ  600
NASKAVAKKA TAMDGQLFLI KHLLILREQI APFDIEFSVT HKELDFSHLL DHLRRILRGQ  660
VSLFDWSRST SLARTFSPRV LENQIDARKE LEKSLKSTCE EFIMSITKLV VDPMLSFVTK  720
VTAVKVALSS GSQGQKLDSV LAKPLKTQAF ASSDKVAELV QKVGAAIQQD LPKVMTMMRL  780
YLQNPSTRLI LFKPIKTNIV EAHIQLHSLL KSEYTADEIQ SIGMLPVRVH NAMLDMVFPL  840
GQPWRVRHCV FSSNKYTSGS VWPSTGLLPT PPAVVSCDHP LIHLRSLCAD QNVD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3zqc_A1e-219101294MYB3
3zqc_D1e-219101294MYB3
3zqc_G1e-219101294MYB3
3zqc_J1e-219101294MYB3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB08G24140.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0671990.0AK067199.1 Oryza sativa Japonica Group cDNA clone:J013097F22, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006660180.10.0PREDICTED: conserved oligomeric Golgi complex subunit 3 isoform X1
TrEMBLJ3MTI40.0J3MTI4_ORYBR; Uncharacterized protein
STRINGOB08G24140.10.0(Oryza brachyantha)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50060.12e-29myb domain protein 77