PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB08G24140.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB | ||||||||
Protein Properties | Length: 894aa MW: 100213 Da PI: 7.44 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 40.6 | 5.9e-13 | 9 | 51 | 1 | 44 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 + +WT+eEde l ++v+++ +W+ Ia ++ +R +k+c++rw OB08G24140.1 9 KTPWTEEEDEVLRRGVREHRRQNWAEIALALP-RRGPKSCRLRW 51 579*****************************.*********** PP | |||||||
2 | Myb_DNA-binding | 37.6 | 5.2e-12 | 63 | 101 | 3 | 43 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksr 43 ++T+eEd l+v+ + +G++ W+tIar++ gR+++ +k+r OB08G24140.1 63 AFTPEEDALIVEQQRVHGNK-WATIARCLT-GRSDNAVKNR 101 79******************.********9.*********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 19.964 | 1 | 59 | IPR017930 | Myb domain |
SMART | SM00717 | 4.1E-12 | 8 | 57 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.03E-24 | 8 | 101 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.2E-19 | 11 | 62 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.87E-12 | 11 | 51 | No hit | No description |
Pfam | PF13921 | 1.2E-13 | 12 | 70 | No hit | No description |
SMART | SM00717 | 3.9E-7 | 60 | 108 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 9.993 | 62 | 110 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-13 | 63 | 101 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.66E-7 | 63 | 101 | No hit | No description |
Pfam | PF04136 | 3.0E-40 | 196 | 330 | IPR007265 | Conserved oligomeric Golgi complex, subunit 3 |
SuperFamily | SSF74788 | 9.42E-5 | 250 | 489 | IPR016159 | Cullin repeat-like-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006886 | Biological Process | intracellular protein transport | ||||
GO:0007030 | Biological Process | Golgi organization | ||||
GO:0009860 | Biological Process | pollen tube growth | ||||
GO:0048193 | Biological Process | Golgi vesicle transport | ||||
GO:0005801 | Cellular Component | cis-Golgi network | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 894 aa Download sequence Send to blast |
MAAGGGGRKT PWTEEEDEVL RRGVREHRRQ NWAEIALALP RRGPKSCRLR WSQPLSPELD 60 SRAFTPEEDA LIVEQQRVHG NKWATIARCL TGRSDNAVKN RPQVQPEMST MPLKAHTGDS 120 FGGLNAPLTE QQNAAIAALS RAVSERPFPA NLEKSLVKDG GAIVPEKEAA LEEGAMDAVL 180 VNTHQFYKWF SELESAMKSE VDDTLSLFEE LQSLHLSVAT KTKTLHDACD QLLLEKQRLI 240 EFAEALRSRL NYFDELENVS TSFYSQTMNI GNEQFLPLLK RLDDCISYVE NNPQYAESAV 300 YLVKFRQLQS RALGMIRSHV LSILKAASSQ VQAAIRGSGT AKNIVTEGVE ASLIYVRFKA 360 AASELKPILG EIESRSSRKE YTQILSECHS LFCEQRLYLI RGMVQQRISE FARKEALPSL 420 TRSGCAYLME ACQFEHQLFA HFFPASASEA SSIAPLMDPL CTYLYDTLRP RLIYEGNIDS 480 LCELVDILKV EVLGEQLSRR GESVAGLRPI LQRILADVHE RLAFCARTHI REEIANFRPS 540 DEDLDYPGKL ERSVDATASS NASGNSDIYV TWYRPLEKTV SCLSKLYHRL EPSVFTGLAQ 600 NASKAVAKKA TAMDGQLFLI KHLLILREQI APFDIEFSVT HKELDFSHLL DHLRRILRGQ 660 VSLFDWSRST SLARTFSPRV LENQIDARKE LEKSLKSTCE EFIMSITKLV VDPMLSFVTK 720 VTAVKVALSS GSQGQKLDSV LAKPLKTQAF ASSDKVAELV QKVGAAIQQD LPKVMTMMRL 780 YLQNPSTRLI LFKPIKTNIV EAHIQLHSLL KSEYTADEIQ SIGMLPVRVH NAMLDMVFPL 840 GQPWRVRHCV FSSNKYTSGS VWPSTGLLPT PPAVVSCDHP LIHLRSLCAD QNVD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3zqc_A | 1e-21 | 9 | 101 | 2 | 94 | MYB3 |
3zqc_D | 1e-21 | 9 | 101 | 2 | 94 | MYB3 |
3zqc_G | 1e-21 | 9 | 101 | 2 | 94 | MYB3 |
3zqc_J | 1e-21 | 9 | 101 | 2 | 94 | MYB3 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB08G24140.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK067199 | 0.0 | AK067199.1 Oryza sativa Japonica Group cDNA clone:J013097F22, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006660180.1 | 0.0 | PREDICTED: conserved oligomeric Golgi complex subunit 3 isoform X1 | ||||
TrEMBL | J3MTI4 | 0.0 | J3MTI4_ORYBR; Uncharacterized protein | ||||
STRING | OB08G24140.1 | 0.0 | (Oryza brachyantha) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50060.1 | 2e-29 | myb domain protein 77 |