PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB08G23440.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB | ||||||||
Protein Properties | Length: 299aa MW: 33583.1 Da PI: 6.9111 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.3 | 3.1e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ lv +++++G+g+W++++ g+ R+ k+c++rw +yl OB08G23440.1 14 KGPWTPEEDLMLVAYIQEHGPGNWRAVPTNTGLMRCSKSCRLRWTNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.2 | 3e-16 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++++E++l+v++ ++lG++ W++Ia++++ Rt++++k++w+++l OB08G23440.1 67 RGNFSEQEEKLIVHLQALLGNR-WAAIASYLP-ERTDNDIKNYWNTHL 112 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.3E-24 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.838 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.67E-30 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.0E-14 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.9E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.22E-11 | 16 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.4E-24 | 65 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.4E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 20.379 | 66 | 116 | IPR017930 | Myb domain |
Pfam | PF00249 | 3.1E-15 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.25E-11 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 299 aa Download sequence Send to blast |
MGRPPCCVKA EVKKGPWTPE EDLMLVAYIQ EHGPGNWRAV PTNTGLMRCS KSCRLRWTNY 60 LRPGIKRGNF SEQEEKLIVH LQALLGNRWA AIASYLPERT DNDIKNYWNT HLKKKLKKMS 120 AGGGEGGDGE GGGXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 180 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXPT 240 PDGSTVTSKT KDETACGAVA APPPAFSMLE SWLLDDGMGH GEAGLMDVVV PLGDPSEFF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 3e-26 | 11 | 116 | 1 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h8a_C | 3e-26 | 11 | 116 | 24 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB08G23440.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT837778 | 0.0 | CT837778.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA023K22, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015648957.1 | 3e-83 | myb-related protein 306 | ||||
Refseq | XP_015695616.1 | 1e-84 | PREDICTED: myb-related protein 306-like | ||||
TrEMBL | A2YVK1 | 6e-82 | A2YVK1_ORYSI; Uncharacterized protein | ||||
TrEMBL | Q6Z535 | 6e-82 | Q6Z535_ORYSJ; Os08g0437200 protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP229 | 38 | 296 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47600.1 | 4e-78 | myb domain protein 94 |