PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB08G23440.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 299aa    MW: 33583.1 Da    PI: 6.9111
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB08G23440.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.33.1e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd+ lv +++++G+g+W++++   g+ R+ k+c++rw +yl
     OB08G23440.1 14 KGPWTPEEDLMLVAYIQEHGPGNWRAVPTNTGLMRCSKSCRLRWTNYL 61
                     79********************************************97 PP

2Myb_DNA-binding51.23e-1667112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++++E++l+v++ ++lG++ W++Ia++++  Rt++++k++w+++l
     OB08G23440.1  67 RGNFSEQEEKLIVHLQALLGNR-WAAIASYLP-ERTDNDIKNYWNTHL 112
                      89********************.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.3E-24564IPR009057Homeodomain-like
PROSITE profilePS5129424.838965IPR017930Myb domain
SuperFamilySSF466893.67E-3012108IPR009057Homeodomain-like
SMARTSM007178.0E-141363IPR001005SANT/Myb domain
PfamPF002496.9E-161461IPR001005SANT/Myb domain
CDDcd001671.22E-111661No hitNo description
Gene3DG3DSA:1.10.10.602.4E-2465117IPR009057Homeodomain-like
SMARTSM007173.4E-1666114IPR001005SANT/Myb domain
PROSITE profilePS5129420.37966116IPR017930Myb domain
PfamPF002493.1E-1567112IPR001005SANT/Myb domain
CDDcd001671.25E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MGRPPCCVKA EVKKGPWTPE EDLMLVAYIQ EHGPGNWRAV PTNTGLMRCS KSCRLRWTNY  60
LRPGIKRGNF SEQEEKLIVH LQALLGNRWA AIASYLPERT DNDIKNYWNT HLKKKLKKMS  120
AGGGEGGDGE GGGXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  180
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXPT  240
PDGSTVTSKT KDETACGAVA APPPAFSMLE SWLLDDGMGH GEAGLMDVVV PLGDPSEFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A3e-26111161105MYB PROTO-ONCOGENE PROTEIN
1h8a_C3e-261111624128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB08G23440.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8377780.0CT837778.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA023K22, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648957.13e-83myb-related protein 306
RefseqXP_015695616.11e-84PREDICTED: myb-related protein 306-like
TrEMBLA2YVK16e-82A2YVK1_ORYSI; Uncharacterized protein
TrEMBLQ6Z5356e-82Q6Z535_ORYSJ; Os08g0437200 protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22938296
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47600.14e-78myb domain protein 94