PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB08G23420.1

Common Name

LOC102717176

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 382aa MW: 42958.4 Da PI: 8.2662

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB08G23420.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	169.5	1.1e-52	16	143	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.k 96 l pGfrFhPtdeelv++yLk+k+++k++++ e i+++diyk++PwdLpk ++++ekewyf+++rd+ky+++ r+nr+t++g+Wkatg+d++++s+ + OB08G23420.1 16 LLPGFRFHPTDEELVSFYLKRKIQQKPISI-ELIRQLDIYKFDPWDLPKLASTGEKEWYFYCPRDRKYRNSARPNRVTAAGFWKATGTDRPIYSTeG 111 579*************************.89***********9888999***********************************956 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 ++ +glkk+Lvfykgra +g ktdW+mhe+rl OB08G23420.1 112 TKCIGLKKSLVFYKGRAARGIKTDWMMHEFRL 143 667*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	9.42E-58	13	174	IPR003441	NAC domain
PROSITE profile	PS51005	57.046	16	174	IPR003441	NAC domain
Pfam	PF02365	6.7E-26	18	143	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 382 aa Download sequence Send to blast
MEERNDISMD KSDEVLLPGF RFHPTDEELV SFYLKRKIQQ KPISIELIRQ LDIYKFDPWD 60 LPKLASTGEK EWYFYCPRDR KYRNSARPNR VTAAGFWKAT GTDRPIYSTE GTKCIGLKKS 120 LVFYKGRAAR GIKTDWMMHE FRLPTLTDPS LPKKPIDKNI PLNDSWTICR IFKKTSSMAQ 180 RALCQTWGPQ LPGAIDPELF STTLQPVQAS QFALESSSCS LQAAAPATQF SNKYGVQGNQ 240 QQQQHKPSNP QDGSSCKVIN FNCSPSADVQ NSQIIVPFEI QTSQKTTGAA PLLFDAQFAQ 300 PEQIGRFVVD SSVNVNGGGI SSKNQDTSAR KPGNGFSMNN EWEGLGRINF PFDLGADSSE 360 DWRSNIPWES FLSPTVHAEM PH

Sequence ? help Back to Top

Protein Sequence Length: 382 aa Download sequence Send to blast

MEERNDISMD KSDEVLLPGF RFHPTDEELV SFYLKRKIQQ KPISIELIRQ LDIYKFDPWD  60
LPKLASTGEK EWYFYCPRDR KYRNSARPNR VTAAGFWKAT GTDRPIYSTE GTKCIGLKKS  120
LVFYKGRAAR GIKTDWMMHE FRLPTLTDPS LPKKPIDKNI PLNDSWTICR IFKKTSSMAQ  180
RALCQTWGPQ LPGAIDPELF STTLQPVQAS QFALESSSCS LQAAAPATQF SNKYGVQGNQ  240
QQQQHKPSNP QDGSSCKVIN FNCSPSADVQ NSQIIVPFEI QTSQKTTGAA PLLFDAQFAQ  300
PEQIGRFVVD SSVNVNGGGI SSKNQDTSAR KPGNGFSMNN EWEGLGRINF PFDLGADSSE  360
DWRSNIPWES FLSPTVHAEM PH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-53	16	177	17	168	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-53	16	177	17	168	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-53	16	177	17	168	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-53	16	177	17	168	NO APICAL MERISTEM PROTEIN
3swm_A	2e-53	16	177	20	171	NAC domain-containing protein 19
3swm_B	2e-53	16	177	20	171	NAC domain-containing protein 19
3swm_C	2e-53	16	177	20	171	NAC domain-containing protein 19
3swm_D	2e-53	16	177	20	171	NAC domain-containing protein 19
3swp_A	2e-53	16	177	20	171	NAC domain-containing protein 19
3swp_B	2e-53	16	177	20	171	NAC domain-containing protein 19
3swp_C	2e-53	16	177	20	171	NAC domain-containing protein 19
3swp_D	2e-53	16	177	20	171	NAC domain-containing protein 19
4dul_A	1e-53	16	177	17	168	NAC domain-containing protein 19
4dul_B	1e-53	16	177	17	168	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269\|PubMed:19081078}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB08G23420.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK073013	0.0	AK073013.1 Oryza sativa Japonica Group cDNA clone:J033000B16, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006659439.1	0.0	PREDICTED: protein FEZ-like
Swissprot	Q9ZVH0	6e-97	FEZ_ARATH; Protein FEZ
TrEMBL	J3MTB2	0.0	J3MTB2_ORYBR; Uncharacterized protein
STRING	OB08G23420.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3366	38	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26870.1	6e-99	NAC family protein

Link Out ? help Back to Top
Entrez Gene	102717176

Publications ? help Back to Top
Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342]