PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB08G23250.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 380aa    MW: 40710.7 Da    PI: 11.11
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB08G23250.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.54.8e-1678123147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed +l ++v+++G+ +W++Ia+++  gR++k+c++rw++ 
     OB08G23250.1  78 RGHWRPAEDAKLRELVALYGPQNWNLIAERLD-GRSGKSCRLRWFNQ 123
                      899*****************************.***********996 PP
2Myb_DNA-binding52.11.5e-16131173246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       +++ eE+e+l  a++ +G++ W+ Iar ++ gRt++ +k++w+ 
     OB08G23250.1 131 RPFSDEEEERLMAAHRFYGNK-WAMIARLFP-GRTDNAVKNHWHV 173
                      68*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.8273124IPR017930Myb domain
SMARTSM007175.3E-1477126IPR001005SANT/Myb domain
PfamPF002497.0E-1678123IPR001005SANT/Myb domain
SuperFamilySSF466891.42E-2778171IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-2579131IPR009057Homeodomain-like
CDDcd001677.49E-1381122No hitNo description
PROSITE profilePS5129424.91125179IPR017930Myb domain
SMARTSM007174.9E-13129177IPR001005SANT/Myb domain
PfamPF002498.7E-13130172IPR001005SANT/Myb domain
CDDcd001671.78E-10132172No hitNo description
Gene3DG3DSA:1.10.10.604.8E-20132178IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MPCSSATAAQ AAWLLQVGAA AEQASSSSSS KGGGRVLTAG TTTMDTGGGG GAGYNGGGGN  60
AGDHQESSSS GQSRLAARGH WRPAEDAKLR ELVALYGPQN WNLIAERLDG RSGKSCRLRW  120
FNQLDPRISK RPFSDEEEER LMAAHRFYGN KWAMIARLFP GRTDNAVKNH WHVIMARKYR  180
EQSTAYRRRK LNQAVQRKLE AAAVASSMPP SAADVVVGHH HHHLIAAAHD PYAFSFRHYC  240
FPFPGSPATA AADEPPFTCL FPVGAGTAAS VAAAAGHGGL SWPDAMAAGG GGGVVMDGGG  300
GRYMVEPPPF LMPAAAHGGN APRLAPRPPR SRHHDTERRR RRRRLGPGRR LRGGDGGVAD  360
VHRLPRRRRD MTDRSIDLSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-32781787107B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1329342RSRHHDTERRRRRR
2336344ERRRRRRRL
3337343RRRRRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00222DAPTransfer from AT1G69560Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB08G23250.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0419831e-158BT041983.1 Zea mays full-length cDNA clone ZM_BFb0095C08 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015695613.10.0PREDICTED: transcription factor MYB23-like
TrEMBLJ3MT950.0J3MT95_ORYBR; Uncharacterized protein
STRINGOB08G23250.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29438260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.12e-70myb domain protein 105