PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB08G21240.1 | ||||||||
Common Name | LOC102705098 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NF-YB | ||||||||
Protein Properties | Length: 282aa MW: 32043.9 Da PI: 4.9042 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 72.1 | 9.4e-23 | 11 | 97 | 3 | 89 |
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkk 89 ++d lP + + +i+k++lP + ++++da++++ ec +efi +++se+++ c re++kti+++ +l al +lGf +y+e++++ ++ OB08G21240.1 11 KEDVSLPKSTMFKIIKEMLPPDVRVARDAQDLLVECCVEFINLLSSESNEVCSREDKKTIAPEHVLRALQDLGFREYIEEVQMAYEQ 97 67999***************************************************************************9976555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 4.1E-38 | 8 | 140 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.19E-33 | 12 | 140 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.4E-19 | 15 | 79 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 282 aa Download sequence Send to blast |
MDPMDIVGKS KEDVSLPKST MFKIIKEMLP PDVRVARDAQ DLLVECCVEF INLLSSESNE 60 VCSREDKKTI APEHVLRALQ DLGFREYIEE VQMAYEQHKH DTLDSPKASK FTGVEMTEEQ 120 AVAEQQRMFA EARARMNNGA AKPKDPEPEA QQQTQPPSQP QVHPQPQQPL QPQLQPHSQP 180 QQQPSQILLH PQSQHIPQLQ PELRPQQQQS SQLQPQPQLH PQLQPAPQLQ TQPQLHPQPP 240 QPPQMQPQQP QLHQQPQQPQ PSPQAELQSQ SQPQTEEGLD SL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_B | 1e-32 | 12 | 133 | 12 | 133 | Transcription Regulator NC2 beta chain |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB08G21240.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF464902 | 0.0 | AF464902.1 Oryza sativa repressor protein (Dr1) mRNA, complete cds. | |||
GenBank | CT830130 | 0.0 | CT830130.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA058B22, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006660096.1 | 0.0 | PREDICTED: protein Dr1 homolog | ||||
Swissprot | P49592 | 9e-80 | NC2B_ARATH; Protein Dr1 homolog | ||||
TrEMBL | J3MSP4 | 0.0 | J3MSP4_ORYBR; Uncharacterized protein | ||||
STRING | OB08G21240.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5720 | 35 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23090.4 | 2e-80 | nuclear factor Y, subunit B13 |
Link Out ? help Back to Top | |
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Entrez Gene | 102705098 |
Publications ? help Back to Top | |||
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