PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB08G20810.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CPP
Protein Properties Length: 625aa    MW: 68404.5 Da    PI: 8.6407
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB08G20810.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR39.11.5e-12174210441
           TCR   4 kgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                   ++C+Ck skClk+YCeCfa+g++C   C+C++C+N+ +
  OB08G20810.1 174 RNCSCKYSKCLKLYCECFAKGRYCIG-CNCTNCCNNVS 210
                   79************************.********976 PP
2TCR46.85.8e-15255293240
           TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                   ++kgCnCkks+ClkkYCeCf++ ++Cse+CkC dCk  +
  OB08G20810.1 255 HTKGCNCKKSECLKKYCECFKSSVFCSENCKCMDCKSYK 293
                   89*********************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011149.3E-9171211IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163432.435172294IPR005172CRC domain
PfamPF036382.1E-8174208IPR005172CRC domain
SMARTSM011145.1E-14254292IPR033467Tesmin/TSO1-like CXC domain
PfamPF036384.5E-11257291IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 625 aa     Download sequence    Send to blast
MDKQLQLPAG SVKIDFASVL YAGKAEIAAT AAALSHALGP PPRTLPCHQH PVIKANSSHS  60
LWPPVLCSSA FAGKRPMPLP SPPPAKKLQV QRSSPMAMLP RAVPKIEVST AEKPAKLQVW  120
RGPRSVSPVL KQGSLKAEMP APLPMPATST DVMLNSQKPW SEILPESKDL TLTRNCSCKY  180
SKCLKLYCEC FAKGRYCIGC NCTNCCNNVS HENARQDAIN VVLERNPAAY MPKIWNSAVH  240
HCEEKTAEGL LVGSHTKGCN CKKSECLKKY CECFKSSVFC SENCKCMDCK SYKTTEDRKA  300
IHPITQQHAV YVHHVQNPAS SGMIGQSVVL SNATENGSSF SLVAPGIQST TNQASHALSC  360
SPTSVPKDET KSRIKYVPHE VTYRPSLTDN IQIEDVNALC NVLVLVSRQA GSALLDSGIK  420
ENTKQKKLCQ AEDCLSSTNH DREAIQKEPD KHLFSVEKSL NEVLIHESTL VLPRVGPFDI  480
KEGSKRPLSP ETQALMCDER DAVFQESKAA DATTSTTEEN LLDIFKEQEK RVLTNFRDYL  540
CKLVNCGRLQ EQKPSLVSAN QEQTSAGNSK DNSSIKGLRR SKYQSPGRQT LARTKMGNAG  600
IGKLIGQKAA NLVPLVVLTE LDQQL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A9e-2517630114130Protein lin-54 homolog
5fd3_B9e-2517630114130Protein lin-54 homolog
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB08G20810.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015695839.10.0PREDICTED: protein tesmin/TSO1-like CXC 7
TrEMBLJ3MSK10.0J3MSK1_ORYBR; Uncharacterized protein
STRINGOB08G20810.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP138462025
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.16e-66Tesmin/TSO1-like CXC domain-containing protein