PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB08G18480.1 | ||||||||
Common Name | LOC102714208 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | TALE | ||||||||
Protein Properties | Length: 201aa MW: 22960.6 Da PI: 6.7985 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 25 | 3.3e-08 | 143 | 176 | 21 | 54 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp++e++++L +++gL+ +q+ +WF N+R + OB08G18480.1 143 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 176 569*****************************87 PP | |||||||
2 | ELK | 27.6 | 6.4e-10 | 97 | 118 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELKh+L+++Y+++L+++++E++ OB08G18480.1 97 ELKHELKQGYKEKLIDIREEIL 118 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01256 | 5.9E-14 | 1 | 42 | IPR005541 | KNOX2 |
Pfam | PF03791 | 9.0E-13 | 1 | 41 | IPR005541 | KNOX2 |
SMART | SM01188 | 0.004 | 97 | 118 | IPR005539 | ELK domain |
Pfam | PF03789 | 1.2E-4 | 97 | 118 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 10.039 | 97 | 117 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.742 | 117 | 180 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.22E-16 | 119 | 184 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 9.7E-11 | 119 | 184 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.33E-11 | 120 | 181 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.0E-25 | 124 | 181 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 4.3E-18 | 137 | 176 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009416 | Biological Process | response to light stimulus | ||||
GO:0009722 | Biological Process | detection of cytokinin stimulus | ||||
GO:0071345 | Biological Process | cellular response to cytokine stimulus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MTHYVLLLCS FKEQLQQHVR VHAMEAVMAC WELEQNLQSL TGASPGEGTG ATMSDGEDDQ 60 ADSEANMYDP SLDGADNMGF GLPTESERSL MERVRQELKH ELKQGYKEKL IDIREEILRK 120 RRAGKLPGDT TSTLKAWWQS HAKWPYPTEE DKARLVQETG LQLKQINNWF INQRKRNWHS 180 NPSTSSNVKT KRKSNAGDNN S |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1x2n_A | 7e-13 | 120 | 184 | 8 | 72 | Homeobox protein PKNOX1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Isoform 3 acts as transcription activator, but isoforms 1 and 2 do not. {ECO:0000269|PubMed:7599652}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB08G18480.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT834586 | 0.0 | CT834586.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN056I08, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015696167.1 | 1e-151 | PREDICTED: homeobox protein knotted-1-like 13 isoform X1 | ||||
Swissprot | Q0J6N4 | 1e-150 | KNOSD_ORYSJ; Homeobox protein knotted-1-like 13 | ||||
TrEMBL | A0A0E0ATH4 | 1e-148 | A0A0E0ATH4_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0LTE4 | 1e-148 | A0A0E0LTE4_ORYPU; Uncharacterized protein | ||||
TrEMBL | J3MRW9 | 1e-149 | J3MRW9_ORYBR; Uncharacterized protein | ||||
STRING | OB08G18480.1 | 1e-150 | (Oryza brachyantha) | ||||
STRING | OPUNC08G08730.1 | 1e-149 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP564 | 38 | 169 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25220.1 | 1e-127 | KNOTTED1-like homeobox gene 3 |
Link Out ? help Back to Top | |
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Entrez Gene | 102714208 |