PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB08G18080.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 282aa    MW: 30014.2 Da    PI: 6.5219
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB08G18080.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.00012101123123
                   EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                   ++C++C + F ++  L  H++ H
  OB08G18080.1 101 FRCNYCQRKFYTSQALGGHQNAH 123
                   89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.61E-698128No hitNo description
PROSITE profilePS5015711.468101128IPR007087Zinc finger, C2H2
PROSITE patternPS000280103123IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MDAASSSQTV SMDVAVKVEG AIGGGGGGGG EEGEGEGEAY KVEAAAMELD LLGALRAEGM  60
EKGKAPPAVM VSEVAPPSVG ERAAAASAVA GGGGEVRRRL FRCNYCQRKF YTSQALGGHQ  120
NAHKRERSLA XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  180
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXSSSR GGPVSPFPTT TAAGLRWAEG  240
SAGGTVHSTA ATATTTGDHN VAAEAKKQEE ISSSKIDLTL KL
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB08G18080.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0054156e-44AP005415.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0091M20.
GenBankAP0149646e-44AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126166e-44CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLJ3MRS99e-61J3MRS9_ORYBR; Uncharacterized protein
STRINGOB08G18080.12e-61(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130642230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80730.11e-14zinc-finger protein 1