PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB08G16090.1

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NF-YC

Protein Properties

Length: 286aa MW: 32005.7 Da PI: 4.5543

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB08G16090.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	150.6	3.1e-47	115	216	1	99
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvd 94 ql++fw++q ie++++fk +lPlarik+i+kadedvkmi+ eaP+l++kace+fil+lt+rsw ++een+rrt++++di+aa+++tdifdflvd OB08G16090.1 115 QLQAFWADQmteIEQMSEFKLPNLPLARIKRIMKADEDVKMIAGEAPALFAKACEMFILDLTMRSWQQTEENRRRTVQRNDIEAAIKKTDIFDFLVD 211 89***9988889********************************************************************************* PP NF-YC 95 ivprd 99 i ++ OB08G16090.1 212 IFDHQ 216 97665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	1.09E-30	105	209	IPR009072	Histone-fold
Pfam	PF00808	3.8E-20	137	200	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	2.1E-33	138	213	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
MATCGSALYG PHSMLHEHLN DPTAVAHWSA SLGMDHPKHN KANEGLTGDN HDDTYAVTTY 60 QPLVMVHGNA SGSAAFPTAS EGAPVYPASN PPQLPEQPQL AIQQVQQLQE QQKQQLQAFW 120 ADQMTEIEQM SEFKLPNLPL ARIKRIMKAD EDVKMIAGEA PALFAKACEM FILDLTMRSW 180 QQTEENRRRT VQRNDIEAAI KKTDIFDFLV DIFDHQEGGT GSQVASMNAM VSPYAPGVAF 240 PYELYPNQHP LVLMWPPQEQ HEQWPPQDYQ QQQQQQQDSG GGGQDE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	2e-42	123	212	3	92	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	187	193	RRTVQRN

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of flowering time under long day (LD) conditions. Functions as repressor of flowering, independently of HD1 and GHD7. Controls flowering time by negatively regulating the expression of EHD1 and HD3A (PubMed:26542958). Component of the NF-Y/HAP transcription factor complex (By similarity). {ECO:0000250, ECO:0000269\|PubMed:26542958}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB08G16090.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation under long day (LD) conditions. Expression increases in the middle of daytime, peaks around the end of the light period and gradually decreases during the dark period and beginning of daylight. {ECO:0000269\|PubMed:26542958}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006659211.1	0.0	PREDICTED: nuclear transcription factor Y subunit C-2-like
Swissprot	Q655V5	2e-48	NFYC4_ORYSJ; Nuclear transcription factor Y subunit C-4
TrEMBL	J3MR80	0.0	J3MR80_ORYBR; Nuclear transcription factor Y subunit C
STRING	OB08G16090.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP16977	11	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63470.2	1e-44	nuclear factor Y, subunit C4

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Kim SK, et al. OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice. Planta, 2016. 243(3): p. 563-76 [PMID:26542958]