PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB08G15090.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | HB-other | ||||||||
Protein Properties | Length: 215aa MW: 24287.8 Da PI: 6.2818 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 66.4 | 3.8e-21 | 108 | 164 | 1 | 57 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+ qVk+WFqN+R+++k+ OB08G15090.1 108 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKN 164 678899************************************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-23 | 89 | 149 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.85E-21 | 94 | 165 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.07 | 105 | 165 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.3E-20 | 106 | 169 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 9.3E-19 | 108 | 163 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.49E-20 | 108 | 166 | No hit | No description |
PRINTS | PR00031 | 4.3E-5 | 136 | 145 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 140 | 163 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 4.3E-5 | 145 | 161 | IPR000047 | Helix-turn-helix motif |
Gene3D | G3DSA:1.10.10.60 | 2.4E-4 | 150 | 192 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MTPARRMPPV IGRNGVAYGS PSAQLPLTQT DLLDSHHLQQ ALQQQYFDQI PVTTTTAPAD 60 SGDNMLHGRA DAGGLGDEFE SKSCSENVDG AGDGLSGDDQ DPNQRPRKKR YHRHTQHQIQ 120 EMEAFFKECP HPDDKQRKEL SRELGLEPLQ VKFWFQNKRT QMKNQHERHE NAQLRAENDK 180 LRAENMRYKE ALSSASCPNC GGPDALGEMS FDEHH |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in protoderm differentiation and radial pattern formation during early embryogenesis. {ECO:0000269|PubMed:11846882}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB08G15090.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB077993 | 0.0 | AB077993.1 Oryza sativa mRNA for Roc1, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006659894.1 | 1e-156 | PREDICTED: homeobox-leucine zipper protein ROC1 | ||||
Swissprot | Q6ZAR0 | 1e-141 | ROC1_ORYSJ; Homeobox-leucine zipper protein ROC1 | ||||
TrEMBL | J3MQY0 | 1e-160 | J3MQY0_ORYBR; Uncharacterized protein | ||||
STRING | OB08G15090.1 | 1e-161 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP26659 | 5 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G05230.4 | 7e-71 | homeodomain GLABROUS 2 |
Publications ? help Back to Top | |||
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