PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB08G14600.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 67aa MW: 7880.85 Da PI: 11.1703 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 36.1 | 1.6e-11 | 35 | 67 | 2 | 38 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgt 38 y GVr+++ +gr++AeIr p++ + r++lg+f+t OB08G14600.1 35 EYLGVRRRP-WGRYAAEIRNPYT---KERHWLGTFDT 67 588******.**********865...5*********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.35E-10 | 34 | 67 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 0.002 | 35 | 67 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 14.486 | 35 | 67 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.7E-15 | 35 | 67 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.5E-5 | 36 | 67 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.3E-6 | 36 | 47 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.3E-6 | 58 | 67 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 67 aa Download sequence Send to blast |
MEDAAEQRTE QQAGAAAVTP QQMMIRRRRA RASSEYLGVR RRPWGRYAAE IRNPYTKERH 60 WLGTFDT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB08G14600.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK241762 | 2e-59 | AK241762.1 Oryza sativa Japonica Group cDNA, clone: J065205D04, full insert sequence. | |||
GenBank | AP005164 | 2e-59 | AP005164.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0054L03. | |||
GenBank | AP014964 | 2e-59 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012616 | 2e-59 | CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006659882.1 | 1e-42 | PREDICTED: ethylene-responsive transcription factor LEP-like | ||||
Swissprot | Q3E703 | 1e-17 | ERF88_ARATH; Ethylene-responsive transcription factor ERF088 | ||||
TrEMBL | J3MQT1 | 5e-41 | J3MQT1_ORYBR; Uncharacterized protein | ||||
STRING | OB08G14600.1 | 9e-42 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1885 | 33 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12890.1 | 4e-20 | ERF family protein |