PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB08G14200.1

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

FAR1

Protein Properties

Length: 842aa MW: 95697.1 Da PI: 7.3542

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB08G14200.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	79.7	5.3e-25	90	178	2	89
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 fY +YA +vGFsvr+++s++sk ++++++ +fvCskeg+++e++ +k+r++ a+ r gC+a+l+v ++ d+kw tkl++eHnHe+ OB08G14200.1 90 FYIAYAGRVGFSVRIARSRRSKCSESVIMLRFVCSKEGFSKEKHVVeGKKTRKRPASIREGCNAMLEVLRRGDSKWIATKLVKEHNHEV 178 9*************************************999876356667777899***************************96 PP
2	FAR1	59.9	8.2e-19	212	302	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fY +YA++vGF+ r+++s+ks ++++ ++ ++vCs++ +++ ++++ ++k+ + +r gC+a +++ +++++ w+v+kl leH+Hel+p OB08G14200.1 212 FYYSYATRVGFEARVRQSRKS-QDESLKMLKLVCSRHRYHSGRESNggDTKRVQALDPSRDGCDALFEIIRKDRDAWKVSKLILEHTHELNP 302 9*****************9.6777**********9999997778888888999****************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.5E-23	90	178	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	6.0E-16	212	302	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.8E-12	413	493	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.545	684	720	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	4.4E-5	695	722	IPR006564	Zinc finger, PMZ-type
Pfam	PF04434	2.5E-4	697	717	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 842 aa Download sequence Send to blast
MEVDGQEAGH GMMEPQVVDL EDDSINFWAS LGVHGVDNMP LHGGVHIVDQ VPTPALSQSV 60 CKELFPVDSD PCLEPRLGME FESGEAAKTF YIAYAGRVGF SVRIARSRRS KCSESVIMLR 120 FVCSKEGFSK EKHVVEGKKT RKRPASIREG CNAMLEVLRR GDSKWIATKL VKEHNHEVGM 180 PSRVHYIATE SDVVVDPYIG MEFESLEAAK TFYYSYATRV GFEARVRQSR KSQDESLKML 240 KLVCSRHRYH SGRESNGGDT KRVQALDPSR DGCDALFEII RKDRDAWKVS KLILEHTHEL 300 NPAPTSRVRC VRSQGEVLVI AKNFSDTRNL LLNGLDSPHH RELRYNDLGP EDVQSFLGYL 360 KKAQTEDPSF FYAAQLDKNG HTANIFWADA KARMAYLHFG DAVRFGMLCR NSKEHIPIAV 420 FSGVNHHVQP VVFGCALIVD DSEASFVWLF EKWLESMPPG PPVSLVLEFN QAMAAAATKT 480 LPDTYCLFCE KHILGVVREE LQSLDLELED FVTDLRKCID WYRLEESFES CWDSVIRKYG 540 FINNELLRSL YDIRRQWAPA YTKKVFCARN LLPQSCHNLE NVVEKHFSCK TQLRVAVQQL 600 EQAVCNFYEK EAQADYLTTF QMPTLRTASP VEKQASSIFT RSIFDKFQEQ FVESFGYHAD 660 RLEVEDVMLH KYCVTVSEGN EEAHTVSFNP EKKTVGCSCC LFESCGILCR HALRVFIIEG 720 VRSLPMAYIL KRWTKHAKSI VTLDDYIDLR GYHDDPSTAR YNDLHSDAIK CAKEGSTSSE 780 LYKIAKEALH KALDELVSLR KSRYQQNLQS SITSVKKPIK KSVKGKDSNH CTGKSLNRLT 840 SI

Sequence ? help Back to Top

Protein Sequence Length: 842 aa Download sequence Send to blast

MEVDGQEAGH GMMEPQVVDL EDDSINFWAS LGVHGVDNMP LHGGVHIVDQ VPTPALSQSV  60
CKELFPVDSD PCLEPRLGME FESGEAAKTF YIAYAGRVGF SVRIARSRRS KCSESVIMLR  120
FVCSKEGFSK EKHVVEGKKT RKRPASIREG CNAMLEVLRR GDSKWIATKL VKEHNHEVGM  180
PSRVHYIATE SDVVVDPYIG MEFESLEAAK TFYYSYATRV GFEARVRQSR KSQDESLKML  240
KLVCSRHRYH SGRESNGGDT KRVQALDPSR DGCDALFEII RKDRDAWKVS KLILEHTHEL  300
NPAPTSRVRC VRSQGEVLVI AKNFSDTRNL LLNGLDSPHH RELRYNDLGP EDVQSFLGYL  360
KKAQTEDPSF FYAAQLDKNG HTANIFWADA KARMAYLHFG DAVRFGMLCR NSKEHIPIAV  420
FSGVNHHVQP VVFGCALIVD DSEASFVWLF EKWLESMPPG PPVSLVLEFN QAMAAAATKT  480
LPDTYCLFCE KHILGVVREE LQSLDLELED FVTDLRKCID WYRLEESFES CWDSVIRKYG  540
FINNELLRSL YDIRRQWAPA YTKKVFCARN LLPQSCHNLE NVVEKHFSCK TQLRVAVQQL  600
EQAVCNFYEK EAQADYLTTF QMPTLRTASP VEKQASSIFT RSIFDKFQEQ FVESFGYHAD  660
RLEVEDVMLH KYCVTVSEGN EEAHTVSFNP EKKTVGCSCC LFESCGILCR HALRVFIIEG  720
VRSLPMAYIL KRWTKHAKSI VTLDDYIDLR GYHDDPSTAR YNDLHSDAIK CAKEGSTSSE  780
LYKIAKEALH KALDELVSLR KSRYQQNLQS SITSVKKPIK KSVKGKDSNH CTGKSLNRLT  840
SI

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB08G14200.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012616	0.0	CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006659165.2	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	J3MQP1	0.0	J3MQP1_ORYBR; Uncharacterized protein
STRING	OB08G14200.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-117	FAR1-related sequence 5