PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB08G13830.1
Common NameLOC102702123
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family LSD
Protein Properties Length: 143aa    MW: 14820.3 Da    PI: 7.9177
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB08G13830.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD144.23.2e-142751125
       zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                  C+gCr+lL+YP+GA+sV+Ca+C tV
  OB08G13830.1 27 CSGCRNLLMYPAGATSVCCAVCSTV 51
                  ***********************99 PP

2zf-LSD146.84.7e-156690125
       zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                  CggC+tlL+Y rGA+sV+C++C+tV
  OB08G13830.1 66 CGGCHTLLMYIRGATSVQCSCCHTV 90
                  ************************9 PP

3zf-LSD141.91.6e-13104128125
       zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                   Cg+Cr lL+Y +GA+sV+Ca+C++V
  OB08G13830.1 104 CGNCRMLLMYQYGARSVKCAVCNFV 128
                   ***********************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010531.0E-132454IPR005735Zinc finger, LSD1-type
PfamPF069431.7E-112751IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010538.5E-156392IPR005735Zinc finger, LSD1-type
PfamPF069431.3E-126690IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010533.9E-12101131IPR005735Zinc finger, LSD1-type
PfamPF069431.0E-12104128IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009814Biological Processdefense response, incompatible interaction
GO:0034051Biological Processnegative regulation of plant-type hypersensitive response
GO:0034052Biological Processpositive regulation of plant-type hypersensitive response
GO:0045595Biological Processregulation of cell differentiation
GO:2000121Biological Processregulation of removal of superoxide radicals
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MPVPLAPYPT PPVPFTPPNG TQSQLVCSGC RNLLMYPAGA TSVCCAVCST VTAVPAPGTE  60
MAQLVCGGCH TLLMYIRGAT SVQCSCCHTV NLAMEANQVA HVNCGNCRML LMYQYGARSV  120
KCAVCNFVTS VGASPGADQK PTS
Functional Description ? help Back to Top
Source Description
UniProtNegative regulator of programmed cell death and hypersensitive response (HR). Positive regulator of callus differentiation. {ECO:0000269|PubMed:15915636}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB08G13830.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. Down-regulated by dark. {ECO:0000269|PubMed:15915636}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ6206760.0AJ620676.1 Oryza sativa Japonica Group mRNA for zinc finger protein, clone Z52.
GenBankAK1117590.0AK111759.1 Oryza sativa Japonica Group cDNA clone:J023055E16, full insert sequence.
GenBankAY5253680.0AY525368.1 Oryza sativa (japonica cultivar-group) zinc finger protein LSD1 mRNA, complete cds.
GenBankCT8324710.0CT832471.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA042K01, full insert sequence.
GenBankCT8324720.0CT832472.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN027E05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015696051.13e-99PREDICTED: protein LSD1
SwissprotQ0J7V98e-88LSD1_ORYSJ; Protein LSD1
TrEMBLJ3MQK48e-98J3MQK4_ORYBR; Uncharacterized protein
STRINGOB08G13830.11e-98(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134738124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.34e-60lsd one like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]