PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB08G13830.1 | ||||||||
Common Name | LOC102702123 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | LSD | ||||||||
Protein Properties | Length: 143aa MW: 14820.3 Da PI: 7.9177 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 44.2 | 3.2e-14 | 27 | 51 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL+YP+GA+sV+Ca+C tV OB08G13830.1 27 CSGCRNLLMYPAGATSVCCAVCSTV 51 ***********************99 PP | |||||||
2 | zf-LSD1 | 46.8 | 4.7e-15 | 66 | 90 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y rGA+sV+C++C+tV OB08G13830.1 66 CGGCHTLLMYIRGATSVQCSCCHTV 90 ************************9 PP | |||||||
3 | zf-LSD1 | 41.9 | 1.6e-13 | 104 | 128 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL+Y +GA+sV+Ca+C++V OB08G13830.1 104 CGNCRMLLMYQYGARSVKCAVCNFV 128 ***********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 1.0E-13 | 24 | 54 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.7E-11 | 27 | 51 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 8.5E-15 | 63 | 92 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.3E-12 | 66 | 90 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 3.9E-12 | 101 | 131 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.0E-12 | 104 | 128 | IPR005735 | Zinc finger, LSD1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009814 | Biological Process | defense response, incompatible interaction | ||||
GO:0034051 | Biological Process | negative regulation of plant-type hypersensitive response | ||||
GO:0034052 | Biological Process | positive regulation of plant-type hypersensitive response | ||||
GO:0045595 | Biological Process | regulation of cell differentiation | ||||
GO:2000121 | Biological Process | regulation of removal of superoxide radicals |
Sequence ? help Back to Top |
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Protein Sequence Length: 143 aa Download sequence Send to blast |
MPVPLAPYPT PPVPFTPPNG TQSQLVCSGC RNLLMYPAGA TSVCCAVCST VTAVPAPGTE 60 MAQLVCGGCH TLLMYIRGAT SVQCSCCHTV NLAMEANQVA HVNCGNCRML LMYQYGARSV 120 KCAVCNFVTS VGASPGADQK PTS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Negative regulator of programmed cell death and hypersensitive response (HR). Positive regulator of callus differentiation. {ECO:0000269|PubMed:15915636}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB08G13830.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. Down-regulated by dark. {ECO:0000269|PubMed:15915636}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ620676 | 0.0 | AJ620676.1 Oryza sativa Japonica Group mRNA for zinc finger protein, clone Z52. | |||
GenBank | AK111759 | 0.0 | AK111759.1 Oryza sativa Japonica Group cDNA clone:J023055E16, full insert sequence. | |||
GenBank | AY525368 | 0.0 | AY525368.1 Oryza sativa (japonica cultivar-group) zinc finger protein LSD1 mRNA, complete cds. | |||
GenBank | CT832471 | 0.0 | CT832471.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA042K01, full insert sequence. | |||
GenBank | CT832472 | 0.0 | CT832472.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN027E05, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015696051.1 | 3e-99 | PREDICTED: protein LSD1 | ||||
Swissprot | Q0J7V9 | 8e-88 | LSD1_ORYSJ; Protein LSD1 | ||||
TrEMBL | J3MQK4 | 8e-98 | J3MQK4_ORYBR; Uncharacterized protein | ||||
STRING | OB08G13830.1 | 1e-98 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1347 | 38 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.3 | 4e-60 | lsd one like 1 |
Link Out ? help Back to Top | |
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Entrez Gene | 102702123 |
Publications ? help Back to Top | |||
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