PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB08G13080.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 329aa    MW: 35489.2 Da    PI: 9.7202
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB08G13080.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.73e-1495139347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+  ++ + ++lG+g+W+ I++ + ++Rt+ q+ s+ qky
     OB08G13080.1  95 PWTEEEHRTFLAGLEKLGKGDWRGISKNFVTTRTPTQVASHAQKY 139
                      8*******************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.43188144IPR017930Myb domain
SuperFamilySSF466891.0E-1789144IPR009057Homeodomain-like
TIGRFAMsTIGR015573.0E-1891143IPR006447Myb domain, plants
SMARTSM007173.5E-1192142IPR001005SANT/Myb domain
CDDcd001677.06E-1095140No hitNo description
PfamPF002494.6E-1295139IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.9E-1295138IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MPQDSRPAAM RLFGVTIAPA PEPEPDPSDH RDPSPPPPVA VREDAMRKCK SMGNLAAAAA  60
SGDAGGSGDG YLSDGGLLQS SGKRRRAQER KKAVPWTEEE HRTFLAGLEK LGKGDWRGIS  120
KNFVTTRTPT QVASHAQKYF LRQTNPNKKR RSSLFDMMSN NLYTCELQSP ASNCPKLEDM  180
VAMTKQLQNS TLEGISSSSA VNLSPQVARD LPPPIPSFKA TNLDSNLSKM NHMDGFLRAP  240
MLFRPIPRFT EGASSPTPAT ANMDALAFQA NLSACTNALF LRSHSKPSPL PKKADPPADE  300
DLDLTVAPPS QQTRASISSQ NAVGVIQVI
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB08G13080.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1063311e-138AK106331.1 Oryza sativa Japonica Group cDNA clone:002-101-F07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015695706.10.0PREDICTED: transcription factor MYB1R1-like isoform X1
TrEMBLJ3MQC90.0J3MQC9_ORYBR; Uncharacterized protein
STRINGOB08G13080.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58583652
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.14e-36MYB_related family protein