PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB08G12110.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | LSD | ||||||||
Protein Properties | Length: 172aa MW: 18569.2 Da PI: 8.4985 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 27.4 | 5.6e-09 | 47 | 69 | 1 | 23 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCd 23 C+gC tlL Y rGA+++RC++C+ OB08G12110.1 47 CSGCPTLLFYNRGASNIRCPSCN 69 **********************8 PP | |||||||
2 | zf-LSD1 | 25.9 | 1.6e-08 | 110 | 134 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Crt+L+ +GA+ V+Ca C V OB08G12110.1 110 CGQCRTTLMHSPGASTVQCATCRYV 134 **********************876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 1.1E-5 | 4 | 34 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 2.7E-4 | 7 | 30 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 2.9E-10 | 45 | 72 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 4.4E-9 | 47 | 69 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 2.6E-9 | 107 | 137 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.4E-9 | 110 | 134 | IPR005735 | Zinc finger, LSD1-type |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
MQDQLICSGC RRVVQYRRGV AGVCCPGCNT LTAVNPSAAA NMSELICSGC PTLLFYNRGA 60 SNIRCPSCNR LNSTRSANSE LQTELKSSDP ELTINGFFEA AANQIAHLTC GQCRTTLMHS 120 PGASTVQCAT CRYVNHVRDA RPQTVLVENP KTLDDKGKLV SNVVVGVTSW KR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB08G12110.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK120454 | 1e-101 | AK120454.1 Oryza sativa Japonica Group cDNA clone:J013104B05, full insert sequence. | |||
GenBank | CT830765 | 1e-101 | CT830765.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA016M05, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006659091.1 | 1e-99 | PREDICTED: protein LOL4 | ||||
Swissprot | Q84UR0 | 2e-98 | LOL4_ORYSJ; Protein LOL4 | ||||
TrEMBL | J3MQ32 | 1e-124 | J3MQ32_ORYBR; Uncharacterized protein | ||||
STRING | OB08G12110.1 | 1e-125 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12333 | 29 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20380.8 | 2e-38 | LSD family protein |
Publications ? help Back to Top | |||
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