PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB08G11180.1
Common NameLOC102718012
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 391aa    MW: 42588.9 Da    PI: 9.5824
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB08G11180.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM158.82.2e-49271522128
           NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 
                   +pGfrFhPt+eel+ +yL++kvegk++++ e i+ vd+y+++PwdLp+ ++ ++kew+f+++rd+ky++g+r+nr+t+sgyWkatg d+ + +++++
  OB08G11180.1  27 MPGFRFHPTEEELIEFYLRRKVEGKRFNI-ELIAFVDLYRYDPWDLPALASIGDKEWFFYVPRDRKYRNGDRPNRVTASGYWKATGADRMIRAENNR 122
                   79***************************.89***************888889******************************************** PP

           NAM  99 lvglkktLvfykgrapkgektdWvmheyrl 128
                    +glkktLvfy g+apkg +++W+m+eyrl
  OB08G11180.1 123 PIGLKKTLVFYVGKAPKGLRSSWIMNEYRL 152
                   ****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-5626172IPR003441NAC domain
PROSITE profilePS5100555.35426172IPR003441NAC domain
PfamPF023651.6E-2428152IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MRGDHQDVAA RGGGGGGDDG QGNDMVMPGF RFHPTEEELI EFYLRRKVEG KRFNIELIAF  60
VDLYRYDPWD LPALASIGDK EWFFYVPRDR KYRNGDRPNR VTASGYWKAT GADRMIRAEN  120
NRPIGLKKTL VFYVGKAPKG LRSSWIMNEY RLPHGDADRY QKEISLCRVY KRPGIEDNFH  180
LTATTTKSSG SKAAKMDKKH AAAYRTSSAT AAAAPRLAPM FDGGGGGHSS ALMGKASAYH  240
EGTNAIAMSL SEAAAGITTT TTAGLHPPAP PPPSMFRSTA SVASLSSTTS TEEDGTSLFH  300
LKGSTNPMQQ LPASTHALLN TNSSAMATIP IDELSRAIGS YSNHHQSNST AATNLVPPSQ  360
QSPLLPFASM EKIWDWNPLL ESPKVCTSFK Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-542817219165NO APICAL MERISTEM PROTEIN
1ut4_B6e-542817219165NO APICAL MERISTEM PROTEIN
1ut7_A6e-542817219165NO APICAL MERISTEM PROTEIN
1ut7_B6e-542817219165NO APICAL MERISTEM PROTEIN
3swm_A8e-542817222168NAC domain-containing protein 19
3swm_B8e-542817222168NAC domain-containing protein 19
3swm_C8e-542817222168NAC domain-containing protein 19
3swm_D8e-542817222168NAC domain-containing protein 19
3swp_A8e-542817222168NAC domain-containing protein 19
3swp_B8e-542817222168NAC domain-containing protein 19
3swp_C8e-542817222168NAC domain-containing protein 19
3swp_D8e-542817222168NAC domain-containing protein 19
4dul_A6e-542817219165NAC domain-containing protein 19
4dul_B6e-542817219165NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB08G11180.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0710520.0AK071052.1 Oryza sativa Japonica Group cDNA clone:J023075E09, full insert sequence.
GenBankAK0722750.0AK072275.1 Oryza sativa Japonica Group cDNA clone:J023012F04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006659059.10.0PREDICTED: transcription factor JUNGBRUNNEN 1-like
TrEMBLJ3MPT90.0J3MPT9_ORYBR; Uncharacterized protein
STRINGOB08G11180.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP77063650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.12e-99NAC domain containing protein 35