PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB08G11040.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 262aa    MW: 30120.3 Da    PI: 8.4111
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB08G11040.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.78.8e-05934123
                  EEET..TTTEEESSHHHHHHHHHH.T CS
       zf-C2H2  1 ykCp..dCgksFsrksnLkrHirt.H 23
                  ++Cp   Cg+ F  k n++rH +  H
  OB08G11040.1  9 FTCPmdGCGRKFGIKANMQRHVKEiH 34
                  89********************9988 PP
2zf-C2H214.50.00014670123
                  EEET..TTTEEESSHHHHHHHHHHT CS
       zf-C2H2  1 ykCp..dCgksFsrksnLkrHirtH 23
                  + C+   C+k+F   s Lk+H  +H
  OB08G11040.1 46 FICKeeGCNKVFMYASKLKKHEESH 70
                  789999***************9988 PP
3zf-C2H214.97.6e-05137161223
                   EET..TTTEEESSHHHHHHHHHH.T CS
       zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                   kC+   C  sFs+ksnL++H +  H
  OB08G11040.1 137 KCSfeGCECSFSNKSNLTKHVKAcH 161
                   688999***************9955 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.7E-6935No hitNo description
PROSITE profilePS5015710.45939IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.8E-7935IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003554.0E-4934IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801134IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.8E-74370IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.0344670IPR007087Zinc finger, C2H2
SMARTSM003550.00874670IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804870IPR007087Zinc finger, C2H2
SMARTSM003557.678103IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028080103IPR007087Zinc finger, C2H2
SMARTSM003559.8106127IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.62E-7117174No hitNo description
Gene3DG3DSA:3.30.160.607.1E-7118158IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.949136166IPR007087Zinc finger, C2H2
SMARTSM003550.013136161IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280138161IPR007087Zinc finger, C2H2
SMARTSM003555.5167193IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280169193IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MLKHQGELFT CPMDGCGRKF GIKANMQRHV KEIHEDGNVT KSNQQFICKE EGCNKVFMYA  60
SKLKKHEESH VKLDYVEVVC CEPGCLKMFT NVECLRAHNQ ACHQYTQCDI CGEKYLKKNI  120
KRHLRAHEGA PSTERIKCSF EGCECSFSNK SNLTKHVKAC HDQIKPFACR YTGCEKVFPY  180
KHVRDNHEKS SAHVYTQANF MEMDEQLRSC PRGGRKRKAV TIETLTRKRV TMDCNASSLD  240
NGTEYLRWLL SGGNDDDSSH NH
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB08G11040.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1004730.0AK100473.1 Oryza sativa Japonica Group cDNA clone:J023093M20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006659053.10.0PREDICTED: transcription factor IIIA-like
SwissprotQ84MZ47e-77TF3A_ARATH; Transcription factor IIIA
TrEMBLJ3MPS50.0J3MPS5_ORYBR; Uncharacterized protein
STRINGOB08G11040.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23823882
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.13e-80transcription factor IIIA