PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB07G33030.1

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB_related

Protein Properties

Length: 412aa MW: 45328.6 Da PI: 6.3251

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB07G33030.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.1	1.7e-07	330	360	1	31
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartm 31 r++W++ ++ l+++vk++G+g+Wk I OB07G33030.1 330 RKKWSEIQEKTLLEGVKKYGKGNWKDIKMAY 360 789***********************97655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.9E-6	328	359	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.32E-7	329	370	IPR009057	Homeodomain-like
Pfam	PF00249	1.4E-5	330	360	IPR001005	SANT/Myb domain
CDD	cd11660	1.72E-15	331	408	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 412 aa Download sequence Send to blast
MPTPADSFLI LEFVAGYRLI PHSIFTALLA SLPSVSPHTS PRLRAGLALR ALDAALSDTD 60 GVDAPSLLHK ARAVLAEPDL APWFPQHLAE PASADDLPAA AVAELKRLLD VEWASLPPSA 120 LEIAAERIVG SGALQFWANA DHAQRSKLRL LVGESTAREI LEKIQQQDAS TNHPAVLPQV 180 DNAPETNGTN DSDCSEEKDK GCPVKQNAKA DHPQEVGVRH QQESMQGAPN DHLKESSVTT 240 ESIRGKDPDI TSFMEEVICP QISGQFTPDN IKNHQVTGPN HSLMERNPTA ITYERDSLGD 300 PGGERPAAKR QLPAFERTPK PSPTAALKTR KKWSEIQEKT LLEGVKKYGK GNWKDIKMAY 360 PDVFEDRSTV RPLICLYHCL CIFCLFVVKV ALMSVQVDLK DKFRNMERHL CV

Sequence ? help Back to Top

Protein Sequence Length: 412 aa Download sequence Send to blast

MPTPADSFLI LEFVAGYRLI PHSIFTALLA SLPSVSPHTS PRLRAGLALR ALDAALSDTD  60
GVDAPSLLHK ARAVLAEPDL APWFPQHLAE PASADDLPAA AVAELKRLLD VEWASLPPSA  120
LEIAAERIVG SGALQFWANA DHAQRSKLRL LVGESTAREI LEKIQQQDAS TNHPAVLPQV  180
DNAPETNGTN DSDCSEEKDK GCPVKQNAKA DHPQEVGVRH QQESMQGAPN DHLKESSVTT  240
ESIRGKDPDI TSFMEEVICP QISGQFTPDN IKNHQVTGPN HSLMERNPTA ITYERDSLGD  300
PGGERPAAKR QLPAFERTPK PSPTAALKTR KKWSEIQEKT LLEGVKKYGK GNWKDIKMAY  360
PDVFEDRSTV RPLICLYHCL CIFCLFVVKV ALMSVQVDLK DKFRNMERHL CV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB07G33030.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006659008.1	0.0	PREDICTED: telomeric repeat-binding factor 2-like
Refseq	XP_015695202.1	0.0	PREDICTED: telomeric repeat-binding factor 2-like
Refseq	XP_015695203.1	0.0	PREDICTED: telomeric repeat-binding factor 2-like
Refseq	XP_015695204.1	0.0	PREDICTED: telomeric repeat-binding factor 2-like
Refseq	XP_015695205.1	0.0	PREDICTED: telomeric repeat-binding factor 2-like
Refseq	XP_015695206.1	0.0	PREDICTED: telomeric repeat-binding factor 2-like
Refseq	XP_015695207.1	0.0	PREDICTED: telomeric repeat-binding factor 2-like
Refseq	XP_015695208.1	0.0	PREDICTED: telomeric repeat-binding factor 2-like
Refseq	XP_015695209.1	0.0	PREDICTED: telomeric repeat-binding factor 2-like
Refseq	XP_015695210.1	0.0	PREDICTED: telomeric repeat-binding factor 2-like
Refseq	XP_015695211.1	0.0	PREDICTED: telomeric repeat-binding factor 2-like
Refseq	XP_015695212.1	0.0	PREDICTED: telomeric repeat-binding factor 2-like
Refseq	XP_015695213.1	0.0	PREDICTED: telomeric repeat-binding factor 2-like
Refseq	XP_015695214.1	0.0	PREDICTED: telomeric repeat-binding factor 2-like
Refseq	XP_015695215.1	0.0	PREDICTED: telomeric repeat-binding factor 2-like
Refseq	XP_015695216.1	0.0	PREDICTED: telomeric repeat-binding factor 2-like
Refseq	XP_015695217.1	0.0	PREDICTED: telomeric repeat-binding factor 2-like
TrEMBL	J3MPH1	0.0	J3MPH1_ORYBR; Uncharacterized protein
STRING	OB07G33030.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13998	22	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G15720.1	7e-07	TRF-like 5