PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB07G32480.1
Common NameLOC102714308
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 269aa    MW: 30375.2 Da    PI: 6.5123
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB07G32480.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.63.4e-191764148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd+ll+++++++G g+W++ ar+ g++Rt+k+c++rw++yl
     OB07G32480.1 17 RGPWTVEEDLLLANYIALHGEGRWNALARCAGLKRTGKSCRLRWLNYL 64
                     89********************************************97 PP
2Myb_DNA-binding537.9e-1770113146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++T+eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
     OB07G32480.1  70 RGNMTAEEQLLILELHGRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 113
                      89********************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.2921264IPR017930Myb domain
SuperFamilySSF466897.86E-3114111IPR009057Homeodomain-like
SMARTSM007176.2E-161666IPR001005SANT/Myb domain
PfamPF002491.8E-171764IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-221871IPR009057Homeodomain-like
CDDcd001671.29E-111964No hitNo description
PROSITE profilePS5129423.7565119IPR017930Myb domain
SMARTSM007174.8E-1569117IPR001005SANT/Myb domain
PfamPF002491.7E-1570113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.0E-2372118IPR009057Homeodomain-like
CDDcd001676.24E-1172113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MMARELSSEE ETADLRRGPW TVEEDLLLAN YIALHGEGRW NALARCAGLK RTGKSCRLRW  60
LNYLRPDVRR GNMTAEEQLL ILELHGRWGN RWSKIAQHLP GRTDNEIKNY WRTRVQKHAK  120
HLNCDVNSQQ FKDLMRYLWM PRLLERIHRS NSNSDSTSDS NSNSAVSSPV VDDAPLPQLA  180
ANAAAMSWHQ QQQPPPPPLM SMPPPPPLPA AASSQLDHQL WSESSSLLPG LAGLYDEVAL  240
PDFDAMWGAS ASYGEDDPWY TQMLQGGVL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-24141174106B-MYB
1h8a_C5e-241411724126MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB07G32480.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1034550.0AK103455.1 Oryza sativa Japonica Group cDNA clone:J033129J22, full insert sequence.
GenBankHQ8588210.0HQ858821.1 Oryza sativa Japonica Group isolate UT1319 MYB transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015695040.10.0PREDICTED: transcription factor MYB108-like
SwissprotQ10MB44e-89MYB2_ORYSJ; Transcription factor MYB2
TrEMBLJ3MPB60.0J3MPB6_ORYBR; Uncharacterized protein
STRINGOB07G32480.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.15e-81myb domain protein 78
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang A,Dai X,Zhang WH
    A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice.
    J. Exp. Bot., 2012. 63(7): p. 2541-56
    [PMID:22301384]
  3. Chen X, et al.
    The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway.
    Plant Cell Physiol., 2014. 55(3): p. 604-19
    [PMID:24399239]
  4. Lv Y, et al.
    New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis.
    Plant Cell Environ., 2016. 39(3): p. 556-70
    [PMID:26381647]
  5. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]